Undergraduate Publications

2022

Tamura T, Zhang J, Madan V, Biswas A, Schwoerer MP, Cafiero TR, et al. Generation and characterization of genetically and antigenically diverse infectious clones of dengue virus serotypes 1-4. Emerg Microbes Infect. 2022 ;11(1):227-239.
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Wang R, Suzuki S, Guest JD, Heller B, Almeda M, Andrianov AK, et al. Induction of broadly neutralizing antibodies using a secreted form of the hepatitis C virus E1E2 heterodimer as a vaccine candidate. Proc Natl Acad Sci U S A. 2022 ;119(11):e2112008119.
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Fei C, Wilson AT, Mangan NM, Wingreen NS, Jonikas MC. Modelling the pyrenoid-based CO-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops. Nat Plants. 2022 ;8(5):583-595.
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Liu Y, Park D, Cafiero TR, Bram Y, Chandar V, Tseng A, et al. Molecular clones of genetically distinct hepatitis B virus genotypes reveal distinct host and drug treatment responses. JHEP Rep. 2022 ;4(9):100535.
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Shen M, Smith HA, Wei Y, Jiang Y-Z, Zhao S, Wang N, et al. Pharmacological disruption of the MTDH-SND1 complex enhances tumor antigen presentation and synergizes with anti-PD-1 therapy in metastatic breast cancer. Nat Cancer. 2022 ;3(1):60-74.
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Suzuki S, Geri JB, Knutson SD, Bell-Temin H, Tamura T, Fernández DF, et al.. Photochemical Identification of Auxiliary Severe Acute Respiratory Syndrome Coronavirus 2 Host Entry Factors Using μMap. J Am Chem Soc. 2022 ;144(36):16604-16611.
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Colonnetta MM, Goyal Y, Johnson HE, Syal S, Schedl P, Deshpande G. Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo. PLoS Genet. 2022 ;18(1):e1010002.
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Bridges AA, Prentice JA, Fei C, Wingreen NS, Bassler BL. Quantitative input-output dynamics of a c-di-GMP signal transduction cascade in Vibrio cholerae. PLoS Biol. 2022 ;20(3):e3001585.
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Cook KC, Tsopurashvili E, Needham JM, Thompson SR, Cristea IM. Restructured membrane contacts rewire organelles for human cytomegalovirus infection. Nat Commun. 2022 ;13(1):4720.
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Bridges AA, Prentice JA, Wingreen NS, Bassler BL. Signal Transduction Network Principles Underlying Bacterial Collective Behaviors. Annu Rev Microbiol. 2022 ;76:235-257.
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Shen M, Wei Y, Kim H, Wan L, Jiang Y-Z, Hang X, et al. Small-molecule inhibitors that disrupt the MTDH-SND1 complex suppress breast cancer progression and metastasis. Nat Cancer. 2022 ;3(1):43-59.
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2021

Wegner SA, Chen J-M, Ip SS, Zhang Y, Dugar D, Avalos JL. Engineering acetyl-CoA supply and ERG9 repression to enhance mevalonate production in Saccharomyces cerevisiae. J Ind Microbiol Biotechnol. 2021 ;48(9-10).
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Crapse J, Pappireddi N, Gupta M, Shvartsman SY, Wieschaus E, Wühr M. Evaluating the Arrhenius equation for developmental processes. Mol Syst Biol. 2021 ;17(8):e9895.
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Betsinger CN, Jankowski CSR, Hofstadter WA, Federspiel JD, Otter CJ, Beltran PMJean, et al. The human cytomegalovirus protein pUL13 targets mitochondrial cristae architecture to increase cellular respiration during infection. Proc Natl Acad Sci U S A. 2021 ;118(32).
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Basta LP, Hill-Oliva M, Paramore SV, Sharan R, Goh A, Biswas A, et al. New mouse models for high resolution and live imaging of planar cell polarity proteins in vivo. Development. 2021 ;148(18).
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Verma A, Jena SG, Isakov DR, Aoki K, Toettcher JE, Engelhardt BE. A self-exciting point process to study multicellular spatial signaling patterns. Proc Natl Acad Sci U S A. 2021 ;118(32).
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Palmer MA, Nerger BA, Goodwin K, Sudhakar A, Lemke SB, Ravindran PT, et al. Stress ball morphogenesis: How the lizard builds its lung. Sci Adv. 2021 ;7(52):eabk0161.
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Farahani PE, Lemke SB, Dine E, Uribe G, Toettcher JE, Nelson CM. Substratum stiffness regulates Erk signaling dynamics through receptor-level control. Cell Rep. 2021 ;37(13):110181.
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2018

Hogue IB, Jean J, Esteves AD, Tanneti NS, Scherer J, Enquist LW. Functional Carboxy-Terminal Fluorescent Protein Fusion to Pseudorabies Virus Small Capsid Protein VP26. J Virol. 2018 ;92(1).
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Ding Q, Nimgaonkar I, Archer NF, Bram Y, Heller B, Schwartz RE, et al. Identification of the Intragenomic Promoter Controlling Hepatitis E Virus Subgenomic RNA Transcription. mBio. 2018 ;9(3).
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Chakrabarti R, Celià-Terrassa T, Kumar S, Hang X, Wei Y, Choudhury A, et al.. Notch ligand Dll1 mediates cross-talk between mammary stem cells and the macrophageal niche. Science. 2018 ;360(6396).
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2017

McCabe AL, Ricci D, Adetunji M, Silhavy TJ. Conformational Changes That Coordinate the Activity of BamA and BamD Allowing β-Barrel Assembly. J Bacteriol. 2017 ;199(20).
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Goyal Y, Jindal GA, Pelliccia JL, Yamaya K, Yeung E, Futran AS, et al. Divergent effects of intrinsically active MEK variants on developmental Ras signaling. Nat Genet. 2017 ;49(3):465-469.
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Liu DD, Kang Y. Ets2 anchors the prometastatic function of mutant p53 in osteosarcoma. Genes Dev. 2017 ;31(18):1823-1824.
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Nadell CD, Ricaurte D, Yan J, Drescher K, Bassler BL. Flow environment and matrix structure interact to determine spatial competition in biofilms. Elife. 2017 ;6.
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