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Ron-Harel N, Santos D, Ghergurovich JM, Sage PT, Reddy A, Lovitch SB, et al. Mitochondrial Biogenesis and Proteome Remodeling Promote One-Carbon Metabolism for T Cell Activation. Cell Metab. 2016 ;24(1):104-17.
Hammer SK, Zhang Y, Avalos JL. Mitochondrial Compartmentalization Confers Specificity to the 2-Ketoacid Recursive Pathway: Increasing Isopentanol Production in . ACS Synth Biol. 2020 ;9(3):546-555.
Betsinger CN, Cristea IM. Mitochondrial Function, Metabolic Regulation, and Human Disease Viewed through the Prism of Sirtuin 4 (SIRT4) Functions. J Proteome Res. 2019 ;18(5):1929-1938.
Mor DE, Murphy CT. Mitochondrial hyperactivity as a potential therapeutic target in Parkinson's disease. Transl Med Aging. 2020 ;4:117-120.
Morscher RJ, Ducker GS, Li SHsin-Jung, Mayer JA, Gitai Z, Sperl W, et al. Mitochondrial translation requires folate-dependent tRNA methylation. Nature. 2018 ;554(7690):128-132.
Shrestha R, Little KA, Tamayo JV, Li W, Perlman DH, Devenport D. Mitotic Control of Planar Cell Polarity by Polo-like Kinase 1. Dev Cell. 2015 ;33(5):522-34.
Devenport D, Oristian D, Heller E, Fuchs E. Mitotic internalization of planar cell polarity proteins preserves tissue polarity. Nat Cell Biol. 2011 ;13(8):893-902.
Seyedsayamdost MR, Cleto S, Carr G, Vlamakis H, Vieira MJoão, Kolter R, et al.. Mixing and matching siderophore clusters: structure and biosynthesis of serratiochelins from Serratia sp. V4. J Am Chem Soc. 2012 ;134(33):13550-3.
Winans SC, Bassler BL. Mob psychology. J Bacteriol. 2002 ;184(4):873-83.
Wilson MZ, Wang R, Gitai Z, Seyedsayamdost MR. Mode of action and resistance studies unveil new roles for tropodithietic acid as an anticancer agent and the γ-glutamyl cycle as a proton sink. Proc Natl Acad Sci U S A. 2016 ;113(6):1630-5.
Wühr M, Tan ES, Parker SK, H Detrich W, Mitchison TJ. A model for cleavage plane determination in early amphibian and fish embryos. Curr Biol. 2010 ;20(22):2040-5.
Statt A, Casademunt H, Brangwynne CP, Panagiotopoulos AZ. Model for disordered proteins with strongly sequence-dependent liquid phase behavior. J Chem Phys. 2020 ;152(7):075101.
Kourouklis AP, Nelson CM. Modeling branching morphogenesis using materials with programmable mechanical instabilities. Curr Opin Biomed Eng. 2018 ;6:66-73.
Tareen A, Wingreen NS, Mukhopadhyay R. Modeling evolution of crosstalk in noisy signal transduction networks. Phys Rev E. 2018 ;97(2-1):020402.
Siu E, Ploss A. Modeling malaria in humanized mice: opportunities and challenges. Ann N Y Acad Sci. 2015 ;1342:29-36.
Li Z, Liu B, Li SHsin-Jung, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020 ;16(8):e1008156.
Graim K, Gorenshteyn D, Robinson DG, Carriero NJ, Cahill JA, Chakrabarti R, et al. Modeling molecular development of breast cancer in canine mammary tumors. Genome Res. 2020 ;.
Noorbakhsh J, Schwab DJ, Sgro AE, Gregor T, Mehta P. Modeling oscillations and spiral waves in Dictyostelium populations. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 ;91(6):062711.
Grant MG, Patterson VL, Grimes DT, Burdine RD. Modeling Syndromic Congenital Heart Defects in Zebrafish. Curr Top Dev Biol. 2017 ;124:1-40.
Lopez JG, Donia MS, Wingreen NS. Modeling the ecology of parasitic plasmids. ISME J. 2021 ;.
Cofer EM, Raimundo J, Tadych A, Yamazaki Y, Wong AK, Theesfeld CL, et al. Modeling transcriptional regulation of model species with deep learning. Genome Res. 2021 ;.
Ozturk S, Forneris CC, Nguy AKL, Sorensen EJ, Seyedsayamdost MR. Modulating OxyB-Catalyzed Cross-Coupling Reactions in Vancomycin Biosynthesis by Incorporation of Diverse d-Tyr Analogues. J Org Chem. 2018 ;83(13):7309-7317.
Gong D, Chi X, Wei J, Zhou G, Huang G, Zhang L, et al. Modulation of cardiac ryanodine receptor 2 by calmodulin. Nature. 2019 ;572(7769):347-351.
Ghersi D, Singh M. molBLOCKS: decomposing small molecule sets and uncovering enriched fragments. Bioinformatics. 2014 ;30(14):2081-3.
Wang X, Paucek RD, Gooding AR, Brown ZZ, Ge EJ, Muir TW, et al. Molecular analysis of PRC2 recruitment to DNA in chromatin and its inhibition by RNA. Nat Struct Mol Biol. 2017 ;24(12):1028-1038.