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Tareen A, Wingreen NS, Mukhopadhyay R. Modeling evolution of crosstalk in noisy signal transduction networks. Phys Rev E. 2018 ;97(2-1):020402.
Siu E, Ploss A. Modeling malaria in humanized mice: opportunities and challenges. Ann N Y Acad Sci. 2015 ;1342:29-36.
Li Z, Liu B, Li SHsin-Jung, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020 ;16(8):e1008156.
Noorbakhsh J, Schwab DJ, Sgro AE, Gregor T, Mehta P. Modeling oscillations and spiral waves in Dictyostelium populations. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 ;91(6):062711.
Grant MG, Patterson VL, Grimes DT, Burdine RD. Modeling Syndromic Congenital Heart Defects in Zebrafish. Curr Top Dev Biol. 2017 ;124:1-40.
Ozturk S, Forneris CC, Nguy AKL, Sorensen EJ, Seyedsayamdost MR. Modulating OxyB-Catalyzed Cross-Coupling Reactions in Vancomycin Biosynthesis by Incorporation of Diverse d-Tyr Analogues. J Org Chem. 2018 ;83(13):7309-7317.
Gong D, Chi X, Wei J, Zhou G, Huang G, Zhang L, et al. Modulation of cardiac ryanodine receptor 2 by calmodulin. Nature. 2019 ;572(7769):347-351.
Ghersi D, Singh M. molBLOCKS: decomposing small molecule sets and uncovering enriched fragments. Bioinformatics. 2014 ;30(14):2081-3.
Wang X, Paucek RD, Gooding AR, Brown ZZ, Ge EJ, Muir TW, et al. Molecular analysis of PRC2 recruitment to DNA in chromatin and its inhibition by RNA. Nat Struct Mol Biol. 2017 ;24(12):1028-1038.
Camberg JL, Sandkvist M. Molecular analysis of the Vibrio cholerae type II secretion ATPase EpsE. J Bacteriol. 2005 ;187(1):249-56.
Ha JYong, Chou H-T, Ungar D, Yip CK, Walz T, Hughson FM. Molecular architecture of the complete COG tethering complex. Nat Struct Mol Biol. 2016 ;23(8):758-60.
Chi X, Gong D, Ren K, Zhou G, Huang G, Lei J, et al. Molecular basis for allosteric regulation of the type 2 ryanodine receptor channel gating by key modulators. Proc Natl Acad Sci U S A. 2019 ;116(51):25575-25582.
Zhao Y, Huang G, Wu J, Wu Q, Gao S, Yan Z, et al. Molecular Basis for Ligand Modulation of a Mammalian Voltage-Gated Ca Channel. Cell. 2019 ;177(6):1495-1506.e12.
Pan X, Li Z, Huang X, Huang G, Gao S, Shen H, et al. Molecular basis for pore blockade of human Na channel Na1.2 by the μ-conotoxin KIIIA. Science. 2019 ;363(6433):1309-1313.
Li W, Wang L, Sheng X, Yan C, Zhou R, Hang J, et al. Molecular basis for the selective and ABA-independent inhibition of PP2CA by PYL13. Cell Res. 2013 ;23(12):1369-79.
Hao Q, Yin P, Li W, Wang L, Yan C, Lin Z, et al. The molecular basis of ABA-independent inhibition of PP2Cs by a subclass of PYL proteins. Mol Cell. 2011 ;42(5):662-72.
Deng D, Sun P, Yan C, Ke M, Jiang X, Xiong L, et al. Molecular basis of ligand recognition and transport by glucose transporters. Nature. 2015 ;526(7573):391-6.
Ke M, Yuan Y, Jiang X, Yan N, Gong H. Molecular determinants for the thermodynamic and functional divergence of uniporter GLUT1 and proton symporter XylE. PLoS Comput Biol. 2017 ;13(6):e1005603.
Debelouchina GT, Muir TW. A molecular engineering toolbox for the structural biologist. Q Rev Biophys. 2017 ;50:e7.
Xie T, Ren R, Zhang Y-yuan, Pang Y, Yan C, Gong X, et al. Molecular mechanism for inhibition of a critical component in the Arabidopsis thaliana abscisic acid signal transduction pathways, SnRK2.6, by protein phosphatase ABI1. J Biol Chem. 2012 ;287(1):794-802.
Farag MA, Hegazi NM, Donia MS. Molecular networking based LC/MS reveals novel biotransformation products of green coffee by ex vivo cultures of the human gut microbiome. Metabolomics. 2020 ;16(8):86.
Chan MM, Smith ZD, Grosswendt S, Kretzmer H, Norman TM, Adamson B, et al. Molecular recording of mammalian embryogenesis. Nature. 2019 ;570(7759):77-82.
Mallarino R, Bermingham E, Willmott KR, Whinnett A, Jiggins CD. Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes. Mol Phylogenet Evol. 2005 ;34(3):625-44.
Tzou D, Spurlin JW, Pavlovich AL, Stewart CR, Gleghorn JP, Nelson CM. Morphogenesis and morphometric scaling of lung airway development follows phylogeny in chicken, quail, and duck embryos. Evodevo. 2016 ;7:12.
Wu S, Zuo Z, Stone HA, Liu S. Motion of a Free-Settling Spherical Particle Driven by a Laser-Induced Bubble. Phys Rev Lett. 2017 ;119(8):084501.