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2016
Zhou J, Troyanskaya OG. Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states. Nat Commun. 2016 ;7:10528.
Hao W, Song M, Storey JD. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics. 2016 ;32(5):713-21.
Li W, Kang Y. Probing the Fifty Shades of EMT in Metastasis. Trends Cancer. 2016 ;2(2):65-67.
Digianantonio KM, Hecht MH. A protein constructed de novo enables cell growth by altering gene regulation. Proc Natl Acad Sci U S A. 2016 ;113(9):2400-5.
Lum KK, Cristea IM. Proteomic approaches to uncovering virus-host protein interactions during the progression of viral infection. Expert Rev Proteomics. 2016 ;13(3):325-40.
Giguère SSB, Guise AJ, Beltran PMJean, Joshi PM, Greco TM, Quach OL, et al.. The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression. Mol Cell Proteomics. 2016 ;15(3):791-809.
Wang Q, J Taliaferro M, Klibaite U, Hilgers V, Shaevitz JW, Rio DC. The PSI-U1 snRNP interaction regulates male mating behavior in Drosophila. Proc Natl Acad Sci U S A. 2016 ;113(19):5269-74.
Navis A, Nelson CM. Pulling together: Tissue-generated forces that drive lumen morphogenesis. Semin Cell Dev Biol. 2016 ;55:139-47.
Siedlik MJ, Varner VD, Nelson CM. Pushing, pulling, and squeezing our way to understanding mechanotransduction. Methods. 2016 ;94:4-12.
2015
Amato SM, Brynildsen MP. Persister Heterogeneity Arising from a Single Metabolic Stress. Curr Biol. 2015 ;25(16):2090-8.
Nadimpalli S, Persikov AV, Singh M. Pervasive variation of transcription factor orthologs contributes to regulatory network evolution. PLoS Genet. 2015 ;11(3):e1005011.
Wingreen NS, Huang KCasey. Physics of Intracellular Organization in Bacteria. Annu Rev Microbiol. 2015 ;69:361-79.
Tkačik G, Dubuis JO, Petkova MD, Gregor T. Positional information, positional error, and readout precision in morphogenesis: a mathematical framework. Genetics. 2015 ;199(1):39-59.
Zhou J, Troyanskaya OG. Predicting effects of noncoding variants with deep learning-based sequence model. Nat Methods. 2015 ;12(10):931-4.
Palmer SE, Marre O, Berry MJ, Bialek W. Predictive information in a sensory population. Proc Natl Acad Sci U S A. 2015 ;112(22):6908-13.
Ren R, Zhou X, He Y, Ke M, Wu J, Liu X, et al. PROTEIN STRUCTURE. Crystal structure of a mycobacterial Insig homolog provides insight into how these sensors monitor sterol levels. Science. 2015 ;349(6244):187-91.
Lin K-W, McDonald KR, Guise AJ, Chan A, Cristea IM, Zakian VA. Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length. Nat Commun. 2015 ;6:8290.
2014
Devergne O, Tsung K, Barcelo G, Schüpbach T. Polarized deposition of basement membrane proteins depends on Phosphatidylinositol synthase and the levels of Phosphatidylinositol 4,5-bisphosphate. Proc Natl Acad Sci U S A. 2014 ;111(21):7689-94.
Kim CK, Miri A, Leung LC, Berndt A, Mourrain P, Tank DW, et al. Prolonged, brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping. Front Neural Circuits. 2014 ;8:138.
2013
Chahal JS, Flint SJ. The p53 protein does not facilitate adenovirus type 5 replication in normal human cells. J Virol. 2013 ;87(10):6044-6.
Di Talia S, She R, Blythe SA, Lu X, Zhang QFan, Wieschaus EF. Posttranslational control of Cdc25 degradation terminates Drosophila's early cell-cycle program. Curr Biol. 2013 ;23(2):127-32.
2012
Mallarino R, Abzhanov A. Paths less traveled: evo-devo approaches to investigating animal morphological evolution. Annu Rev Cell Dev Biol. 2012 ;28:743-63.
Nguyen TD, Deshmukh N, Nagarah JM, Kramer T, Purohit PK, Berry MJ, et al. Piezoelectric nanoribbons for monitoring cellular deformations. Nat Nanotechnol. 2012 ;7(9):587-93.
Ciccia A, Nimonkar AV, Hu Y, Hajdu I, Achar YJagadheesh, Izhar L, et al. Polyubiquitinated PCNA recruits the ZRANB3 translocase to maintain genomic integrity after replication stress. Mol Cell. 2012 ;47(3):396-409.
2011
Toettcher JE, Voigt CA, Weiner OD, Lim WA. The promise of optogenetics in cell biology: interrogating molecular circuits in space and time. Nat Methods. 2011 ;8(1):35-8.