Publications
The languages of bacteria. Genes Dev. 2001 ;15(12):1468-80.
. Drop morphologies on flexible fibers: influence of elastocapillary effects. Soft Matter. 2016 ;13(1):134-140.
. Fibronectin matrix as a scaffold for procollagen proteinase binding and collagen processing. Mol Biol Cell. 2019 ;30(17):2218-2226.
. Initiating Events in Direct Cardiomyocyte Reprogramming. Cell Rep. 2018 ;22(7):1913-1922.
. Exploratory subgroup analysis of patients with prior trastuzumab use in the ATTRACTION-2 trial: a randomized phase III clinical trial investigating the efficacy and safety of nivolumab in patients with advanced gastric/gastroesophageal junction cancer. Gastric Cancer. 2020 ;23(1):143-153.
. Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons. Mol Psychiatry. 2020 ;25(5):1112-1129.
. Red Blood Cell Invasion by the Malaria Parasite Is Coordinated by the PfAP2-I Transcription Factor. Cell Host Microbe. 2017 ;21(6):731-741.e10.
. Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. Nat Microbiol. 2019 ;4(8):1274-1281.
. Non-Monotonic Survival of Staphylococcus aureus with Respect to Ciprofloxacin Concentration Arises from Prophage-Dependent Killing of Persisters. Pharmaceuticals (Basel). 2015 ;8(4):778-92.
. Neurodegenerative disease: RNA repeats put a freeze on cells. Nature. 2017 ;546(7657):215-216.
. Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization. Cell. 2020 ;181(2):306-324.e28.
. MicroRNA-200, associated with metastatic breast cancer, promotes traits of mammary luminal progenitor cells. Oncotarget. 2017 ;8(48):83384-83406.
. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Syst. 2015 ;1(6):396-407.
. Rotation of a submerged finite cylinder moving down a soft incline. Soft Matter. 2020 ;16(16):4000-4007.
. An integrated network analysis identifies how ArcAB enables metabolic oscillations in the nitric oxide detoxification network of Escherichia coli. Biotechnol J. 2017 ;12(8).
. Force generation by groups of migrating bacteria. Proc Natl Acad Sci U S A. 2017 ;114(28):7266-7271.
. Role of the Membrane for Mechanosensing by Tethered Channels. Phys Rev Lett. 2016 ;116(25):258101.
. Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. PLoS Comput Biol. 2020 ;16(6):e1007892.
. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proc Natl Acad Sci U S A. 2020 ;117(21):11541-11550.
. Superinfection and the evolution of an initial asymptomatic stage. R Soc Open Sci. 2021 ;8(1):202212.
. Bacterial quorum sensing: its role in virulence and possibilities for its control. Cold Spring Harb Perspect Med. 2012 ;2(11).
. AphA and LuxR/HapR reciprocally control quorum sensing in vibrios. Genes Dev. 2011 ;25(4):397-408.
. Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing. Proc Natl Acad Sci U S A. 2015 ;112(44):E6038-47.
. Long-term dynamics of multisite phosphorylation. Mol Biol Cell. 2016 ;27(14):2331-40.
. Efficient inference for time-varying behavior during learning. Adv Neural Inf Process Syst. 2018 ;31:5695-5705.
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