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Bauer M, Petkova MD, Gregor T, Wieschaus EF, Bialek W. Trading bits in the readout from a genetic network. Proc Natl Acad Sci U S A. 2021 ;118(46).
Zhang Y, Avalos JL. Traditional and novel tools to probe the mitochondrial metabolism in health and disease. Wiley Interdiscip Rev Syst Biol Med. 2017 ;9(2).
Levo M, Raimundo J, Bing XYang, Sisco Z, Batut PJ, Ryabichko S, et al. Transcriptional coupling of distant regulatory genes in living embryos. Nature. 2022 ;.
Alfonso-Dunn R, Turner A-MW, Beltran PMJean, Arbuckle JH, Budayeva HG, Cristea IM, et al. Transcriptional Elongation of HSV Immediate Early Genes by the Super Elongation Complex Drives Lytic Infection and Reactivation from Latency. Cell Host Microbe. 2017 ;21(4):507-517.e5.
Kaletsky R, Murphy CT. Transcriptional Profiling of C. elegans Adult Cells and Tissues with Age. Methods Mol Biol. 2020 ;2144:177-186.
Lebedeva LA, Yakovlev KV, Kozlov EN, Schedl P, Deshpande G, Shidlovskii YV. Transcriptional quiescence in primordial germ cells. Crit Rev Biochem Mol Biol. 2018 ;53(6):579-595.
Erokhin M, Elizar'ev P, Parshikov A, Schedl P, Georgiev P, Chetverina D. Transcriptional read-through is not sufficient to induce an epigenetic switch in the silencing activity of Polycomb response elements. Proc Natl Acad Sci U S A. 2015 ;112(48):14930-5.
Adolfsen KJ, Chou WKang, Brynildsen MP. Transcriptional Regulation Contributes to Prioritized Detoxification of Hydrogen Peroxide over Nitric Oxide. J Bacteriol. 2019 ;201(14).
Momen-Roknabadi A, Di Talia S, Wieschaus E. Transcriptional Timers Regulating Mitosis in Early Drosophila Embryos. Cell Rep. 2016 ;16(11):2793-2801.
Wong M-C, Kennedy WP, Schwarzbauer JE. Transcriptionally regulated cell adhesion network dictates distal tip cell directionality. Dev Dyn. 2014 ;243(8):999-1010.
Kaletsky R, Yao V, Williams A, Runnels AM, Tadych A, Zhou S, et al. Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression. PLoS Genet. 2018 ;14(8):e1007559.
Chen X, Du Y, Broussard GJoey, Kislin M, Yuede CM, Zhang S, et al. Transcriptomic mapping uncovers Purkinje neuron plasticity driving learning. Nature. 2022 ;.
Heck BW, Devenport D. Trans-endocytosis of Planar Cell Polarity Complexes during Cell Division. Curr Biol. 2017 ;27(23):3725-3733.e4.
Aw WYih, Heck BW, Joyce B, Devenport D. Transient Tissue-Scale Deformation Coordinates Alignment of Planar Cell Polarity Junctions in the Mammalian Skin. Curr Biol. 2016 ;26(16):2090-100.
Thawani A, Rale MJ, Coudray N, Bhabha G, Stone HA, Shaevitz JW, et al. The transition state and regulation of γ-TuRC-mediated microtubule nucleation revealed by single molecule microscopy. Elife. 2020 ;9.
Wan X, A Link J, Brynildsen MP. Translational Fusion to Hmp Improves Heterologous Protein Expression. Microorganisms. 2022 ;10(2).
Jaslove JM, Goodwin K, Sundarakrishnan A, Spurlin JW, Mao S, Košmrlj A, et al.. Transmural pressure signals through retinoic acid to regulate lung branching. Development. 2022 ;149(2).
Kennedy MA, Hofstadter WA, Cristea IM. TRANSPIRE: A Computational Pipeline to Elucidate Intracellular Protein Movements from Spatial Proteomics Data Sets. J Am Soc Mass Spectrom. 2020 ;31(7):1422-1439.
Mattingly HH, Chen JJ, Arur S, Shvartsman SY. A Transport Model for Estimating the Time Course of ERK Activation in the C. elegans Germline. Biophys J. 2015 ;109(11):2436-45.
Balo AR, Caruso A, Tao L, Tantillo DJ, Seyedsayamdost MR, R Britt D. Trapping a cross-linked lysine-tryptophan radical in the catalytic cycle of the radical SAM enzyme SuiB. Proc Natl Acad Sci U S A. 2021 ;118(21).
Rajeshkumar NV, Yabuuchi S, Pai SG, De Oliveira E, Kamphorst JJ, Rabinowitz JD, et al. Treatment of Pancreatic Cancer Patient-Derived Xenograft Panel with Metabolic Inhibitors Reveals Efficacy of Phenformin. Clin Cancer Res. 2017 ;23(18):5639-5647.
Spadazzi C, Mercatali L, Esposito M, Wei Y, Liverani C, De Vita A, et al. Trefoil factor-1 upregulation in estrogen-receptor positive breast cancer correlates with an increased risk of bone metastasis. Bone. 2021 ;144:115775.
Kennedy MA, Tyl MD, Betsinger CN, Federspiel JD, Sheng X, Arbuckle JH, et al. A TRUSTED targeted mass spectrometry assay for pan-herpesvirus protein detection. Cell Rep. 2022 ;39(6):110810.
García-Cañaveras JC, Chen L, Rabinowitz JD. The Tumor Metabolic Microenvironment: Lessons from Lactate. Cancer Res. 2019 ;79(13):3155-3162.
Meng J, Jiang Y-Z, Zhao S, Tao Y, Zhang T, Wang X, et al. Tumor-derived Jagged1 promotes cancer progression through immune evasion. Cell Rep. 2022 ;38(10):110492.