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Vrla GD, Esposito M, Zhang C, Kang Y, Seyedsayamdost MR, Gitai Z. Cytotoxic alkyl-quinolones mediate surface-induced virulence in Pseudomonas aeruginosa. PLoS Pathog. 2020 ;16(9):e1008867.
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Pujol F, Hodgson T, Martinez-Corral I, Prats A-C, Devenport D, Takeichi M, et al. Dachsous1-Fat4 Signaling Controls Endothelial Cell Polarization During Lymphatic Valve Morphogenesis-Brief Report. Arterioscler Thromb Vasc Biol. 2017 ;37(9):1732-1735.
Dannenfelser R, Nome M, Tahiri A, Ursini-Siegel J, Vollan HKristian M, Haakensen VD, et al. Data-driven analysis of immune infiltrate in a large cohort of breast cancer and its association with disease progression, ER activity, and genomic complexity. Oncotarget. 2017 ;.
Dannenfelser R, Nome M, Tahiri A, Ursini-Siegel J, Vollan HKristian M, Haakensen VD, et al. Data-driven analysis of immune infiltrate in a large cohort of breast cancer and its association with disease progression, ER activity, and genomic complexity. Oncotarget. 2017 ;8(34):57121-57133.
Donnelly AE, Murphy GS, Digianantonio KM, Hecht MH. A de novo enzyme catalyzes a life-sustaining reaction in Escherichia coli. Nat Chem Biol. 2018 ;14(3):253-255.
Hoegler KJ, Hecht MH. A de novo protein confers copper resistance in Escherichia coli. Protein Sci. 2016 ;25(7):1249-59.
Murphy GS, Greisman JB, Hecht MH. De Novo Proteins with Life-Sustaining Functions Are Structurally Dynamic. J Mol Biol. 2016 ;428(2 Pt A):399-411.
Wong AK, Sealfon RSG, Theesfeld CL, Troyanskaya OG. Decoding disease: from genomes to networks to phenotypes. Nat Rev Genet. 2021 ;22(12):774-790.
Hallinen KM, Dempsey R, Scholz M, Yu X, Linder A, Randi F, et al. Decoding locomotion from population neural activity in moving . Elife. 2021 ;10.
Zhang Y, Xu B, Weiner BG, Meir Y, Wingreen NS. Decoding the physical principles of two-component biomolecular phase separation. Elife. 2021 ;10.
Bisht K, Velthuis AJWTe. Decoding the Role of Temperature in RNA Virus Infections. mBio. 2022 ;13(5):e0202122.
Mesev EV, LeDesma RA, Ploss A. Decoding type I and III interferon signalling during viral infection. Nat Microbiol. 2019 ;4(6):914-924.
Golonka D, Fischbach P, Jena SG, Kleeberg JRW, Essen L-O, Toettcher JE, et al. Deconstructing and repurposing the light-regulated interplay between phytochromes and interacting factors. Commun Biol. 2019 ;2:448.
Stern T, Shvartsman SY, Wieschaus EF. Deconstructing gastrulation at single-cell resolution. Curr Biol. 2022 ;32(8):1861-1868.e7.
Gauthier JL, Tank DW. A Dedicated Population for Reward Coding in the Hippocampus. Neuron. 2018 ;99(1):179-193.e7.
Swem LR, Swem DL, Wingreen NS, Bassler BL. Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi. Cell. 2008 ;134(3):461-73.
Zhou J, Theesfeld CL, Yao K, Chen KM, Wong AK, Troyanskaya OG. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nat Genet. 2018 ;50(8):1171-1179.
Klibaite U, Kislin M, Verpeut JL, Bergeler S, Sun X, Shaevitz JW, et al. Deep phenotyping reveals movement phenotypes in mouse neurodevelopmental models. Mol Autism. 2022 ;13(1):12.
Wühr M, Freeman RM, Presler M, Horb ME, Peshkin L, Gygi S, et al.. Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database. Curr Biol. 2014 ;24(13):1467-1475.
Ron-Harel N, Notarangelo G, Ghergurovich JM, Paulo JA, Sage PT, Santos D, et al. Defective respiration and one-carbon metabolism contribute to impaired naïve T cell activation in aged mice. Proc Natl Acad Sci U S A. 2018 ;115(52):13347-13352.
Carpenter JE, Clayton AC, Halling KC, Bonthius DJ, Buckingham EM, Jackson W, et al. Defensive Perimeter in the Central Nervous System: Predominance of Astrocytes and Astrogliosis during Recovery from Varicella-Zoster Virus Encephalitis. J Virol. 2016 ;90(1):379-91.
Balaban NQ, Helaine S, Lewis K, Ackermann M, Aldridge B, Andersson DI, et al. Definitions and guidelines for research on antibiotic persistence. Nat Rev Microbiol. 2019 ;17(7):441-448.
Remillard D, Buckley DL, Paulk J, Brien GL, Sonnett M, Seo H-S, et al. Degradation of the BAF Complex Factor BRD9 by Heterobifunctional Ligands. Angew Chem Int Ed Engl. 2017 ;56(21):5738-5743.
Munro D, Singh M. DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction. Bioinformatics. 2020 ;36(22-23):5322-9.
Gaydosh L, Mitchell C, Notterman D, Schneper L, Brooks-Gunn J, Wagner B, et al. Demographic and developmental patterns in telomere length across adolescence. Biodemography Soc Biol. 2020 ;66(3-4):208-219.