Publications
] . Domain prediction with probabilistic directional context. Bioinformatics. 2017 ;33(16):2471-2478.
. Metabolite Spectral Accuracy on Orbitraps. Anal Chem. 2017 ;89(11):5940-5948.
. Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. Cell Syst. 2017 ;5(3):221-229.e4.
. Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nat Methods. 2017 ;14(4):420-426.
. Analysis of Longitudinal Outcome Data with Missing Values in Total Knee Arthroplasty. J Arthroplasty. 2016 ;31(1):81-6.
. Biophysical Measurements of Bacterial Cell Shape. Methods Mol Biol. 2016 ;1440:227-45.
. Inferring interaction partners from protein sequences. Proc Natl Acad Sci U S A. 2016 ;113(43):12180-12185.
. Predictability and hierarchy in Drosophila behavior. Proc Natl Acad Sci U S A. 2016 ;113(42):11943-11948.
. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics. 2016 ;32(5):713-21.
. Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku. Nat Commun. 2016 ;7:13270.
. Recurrent Network Models of Sequence Generation and Memory. Neuron. 2016 ;90(1):128-42.
. Scaling probabilistic models of genetic variation to millions of humans. Nat Genet. 2016 ;48(12):1587-1590.
. Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput Biol. 2015 ;11(11):e1004509.
. Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 2015 ;43(3):605-14.
. Predicting effects of noncoding variants with deep learning-based sequence model. Nat Methods. 2015 ;12(10):931-4.
. Statistical significance of variables driving systematic variation in high-dimensional data. Bioinformatics. 2015 ;31(4):545-54.
. Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution. Nature. 2015 ;517(7532):50-55.
. Thermodynamics and signatures of criticality in a network of neurons. Proc Natl Acad Sci U S A. 2015 ;112(37):11508-13.
. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal Chem. 2014 ;86(14):7150-8.
. Mapping a complete neural population in the retina. J Neurosci. 2012 ;32(43):14859-73.
. Semi-automated atlas-based analysis of brain histological sections. J Neurosci Methods. 2011 ;196(1):12-9.
. Synchronized firing among retinal ganglion cells signals motion reversal. Neuron. 2007 ;55(6):958-69.
. Functional organization of ganglion cells in the salamander retina. J Neurophysiol. 2006 ;95(4):2277-92.
. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005 ;307(5712):1121-4.
. Recording spikes from a large fraction of the ganglion cells in a retinal patch. Nat Neurosci. 2004 ;7(10):1154-61.