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Kopec CD, Bowers AC, Pai S, Brody CD. Semi-automated atlas-based analysis of brain histological sections. J Neurosci Methods. 2011 ;196(1):12-9.
Koyuncu OO, MacGibeny MA, Hogue IB, Enquist LW. Compartmented neuronal cultures reveal two distinct mechanisms for alpha herpesvirus escape from genome silencing. PLoS Pathog. 2017 ;13(10):e1006608.
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Laval K, Van Cleemput J, Vernejoul JB, Enquist LW. Alphaherpesvirus infection of mice primes PNS neurons to an inflammatory state regulated by TLR2 and type I IFN signaling. PLoS Pathog. 2019 ;15(11):e1008087.
Liu M, Sharma AK, Shaevitz JW, Leifer AM. Temporal processing and context dependency in response to mechanosensation. Elife. 2018 ;7.
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Machens CK, Romo R, Brody CD. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005 ;307(5712):1121-4.
Markowitz DA, Collman F, Brody CD, Hopfield JJ, Tank DW. Rate-specific synchrony: using noisy oscillations to detect equally active neurons. Proc Natl Acad Sci U S A. 2008 ;105(24):8422-7.
Marre O, Amodei D, Deshmukh N, Sadeghi K, Soo F, Holy TE, et al. Mapping a complete neural population in the retina. J Neurosci. 2012 ;32(43):14859-73.
Marvin JS, Scholl B, Wilson DE, Podgorski K, Kazemipour A, Müller JAlexander, et al.. Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR. Nat Methods. 2018 ;15(11):936-939.
Meister M, Berry MJ. The neural code of the retina. Neuron. 1999 ;22(3):435-50.
Meshulam L, Gauthier JL, Brody CD, Tank DW, Bialek W. Collective Behavior of Place and Non-place Neurons in the Hippocampal Network. Neuron. 2017 ;96(5):1178-1191.e4.
Misra M, Edmund H, Ennis D, Schlueter MA, Marot JE, Tambasco J, et al. A Genome-Wide Screen for Dendritically Localized RNAs Identifies Genes Required for Dendrite Morphogenesis. G3 (Bethesda). 2016 ;6(8):2397-405.
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Nguyen JP, Shipley FB, Linder AN, Plummer GS, Liu M, Setru SU, et al. Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2016 ;113(8):E1074-81.
Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM. Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol. 2017 ;13(5):e1005517.
Nguyen TD, Deshmukh N, Nagarah JM, Kramer T, Purohit PK, Berry MJ, et al. Piezoelectric nanoribbons for monitoring cellular deformations. Nat Nanotechnol. 2012 ;7(9):587-93.
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Palmer SE, Marre O, Berry MJ, Bialek W. Predictive information in a sensory population. Proc Natl Acad Sci U S A. 2015 ;112(22):6908-13.
Pereira TD, Murthy M. To Fight or Not to Fight. Neuron. 2017 ;95(5):986-988.
Pomeranz LE, Ekstrand MI, Latcha KN, Smith GA, Enquist LW, Friedman JM. Gene Expression Profiling with Cre-Conditional Pseudorabies Virus Reveals a Subset of Midbrain Neurons That Participate in Reward Circuitry. J Neurosci. 2017 ;37(15):4128-4144.
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Rajan K, Harvey CD, Tank DW. Recurrent Network Models of Sequence Generation and Memory. Neuron. 2016 ;90(1):128-42.
Rickgauer JPeter, Deisseroth K, Tank DW. Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields. Nat Neurosci. 2014 ;17(12):1816-24.
Romo R, Brody CD, Hernández A, Lemus L. Neuronal correlates of parametric working memory in the prefrontal cortex. Nature. 1999 ;399(6735):470-3.
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Schneidman E, Berry MJ, Segev R, Bialek W. Weak pairwise correlations imply strongly correlated network states in a neural population. Nature. 2006 ;440(7087):1007-12.
Schneidman E, Bialek W, Berry MJ. Synergy, redundancy, and independence in population codes. J Neurosci. 2003 ;23(37):11539-53.
Scott BB, Constantinople CM, Akrami A, Hanks TD, Brody CD, Tank DW. Fronto-parietal Cortical Circuits Encode Accumulated Evidence with a Diversity of Timescales. Neuron. 2017 ;95(2):385-398.e5.
Song A, Charles AS, Koay SAnn, Gauthier JL, Thiberge SY, Pillow JW, et al. Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nat Methods. 2017 ;14(4):420-426.