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Bass AJ, Storey JD. The optimal discovery procedure for significance analysis of general gene expression studies. Bioinformatics. 2020 ;.
Bosse JB, Tanneti NS, Hogue IB, Enquist LW. Open LED Illuminator: A Simple and Inexpensive LED Illuminator for Fast Multicolor Particle Tracking in Neurons. PLoS One. 2015 ;10(11):e0143547.
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Cande J, Namiki S, Qiu J, Korff W, Card GM, Shaevitz JW, et al. Optogenetic dissection of descending behavioral control in . Elife. 2018 ;7.
Carrasco-López C, García-Echauri SA, Kichuk T, Avalos JL. Optogenetics and biosensors set the stage for metabolic cybergenetics. Curr Opin Biotechnol. 2020 ;65:296-309.
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DeCandia AL, Leverett KN, vonHoldt BM. Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites. Parasit Vectors. 2019 ;12(1):488.
DeGennaro M, McBride CS, Seeholzer L, Nakagawa T, Dennis EJ, Goldman C, et al. orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET. Nature. 2013 ;498(7455):487-91.
Dine E, Toettcher JE. Optogenetic Reconstitution for Determining the Form and Function of Membraneless Organelles. Biochemistry. 2018 ;57(17):2432-2436.
Ducker GS, Rabinowitz JD. One-Carbon Metabolism in Health and Disease. Cell Metab. 2017 ;25(1):27-42.
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Gao J, Schwartz G, Berry MJ, Holmes P. An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns. Network. 2009 ;20(2):106-35.
Gil AA, Carrasco-López C, Zhu L, Zhao EM, Ravindran PT, Wilson MZ, et al.. Optogenetic control of protein binding using light-switchable nanobodies. Nat Commun. 2020 ;11(1):4044.
Goglia AG, Wilson MZ, DiGiorno DB, Toettcher JE. Optogenetic Control of Ras/Erk Signaling Using the Phy-PIF System. Methods Mol Biol. 2017 ;1636:3-20.
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Harder JL, Menon R, Otto EA, Zhou J, Eddy S, Wys NL, et al. Organoid single cell profiling identifies a transcriptional signature of glomerular disease. JCI Insight. 2019 ;4(1).
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Johnson HE, Djabrayan NJV, Shvartsman SY, Toettcher JE. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020 ;30(17):3414-3424.e3.
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Kang JH, Um E, Diaz A, Driscoll H, Rodas MJ, Domansky K, et al. Optimization of Pathogen Capture in Flowing Fluids with Magnetic Nanoparticles. Small. 2015 ;11(42):5657-66.
Konovalova A, Silhavy TJ. Outer membrane lipoprotein biogenesis: Lol is not the end. Philos Trans R Soc Lond B Biol Sci. 2015 ;370(1679).
Konovalova A, Kahne DE, Silhavy TJ. Outer Membrane Biogenesis. Annu Rev Microbiol. 2017 ;71:539-556.
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Lalwani MA, Ip SS, Carrasco-López C, Day C, Zhao EM, Kawabe H, et al.. Optogenetic control of the lac operon for bacterial chemical and protein production. Nat Chem Biol. 2021 ;17(1):71-79.
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Mok WWK, Brynildsen MP. An Orphan Riboswitch Unveils Guanidine Regulation in Bacteria. Mol Cell. 2017 ;65(2):205-206.
Murray LA, Sheng X, Cristea IM. Orchestration of protein acetylation as a toggle for cellular defense and virus replication. Nat Commun. 2018 ;9(1):4967.
Murray LA, Sheng X, Cristea IM. Orchestration of protein acetylation as a toggle for cellular defense and virus replication. Nat Commun. 2018 ;9(1):4967.
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Nadell CD, Bassler BL, Levin SA. Observing bacteria through the lens of social evolution. J Biol. 2008 ;7(7):27.
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Patel AL, Shvartsman SY. Outstanding questions in developmental ERK signaling. Development. 2018 ;145(14).
Patel AL, Yeung E, McGuire SE, Wu AY, Toettcher JE, Burdine RD, et al. Optimizing photoswitchable MEK. Proc Natl Acad Sci U S A. 2019 ;116(51):25756-25763.
Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 2019 ;176(4):844-855.e15.
Pilizota T, Shaevitz JW. Origins of Escherichia coli growth rate and cell shape changes at high external osmolality. Biophys J. 2014 ;107(8):1962-1969.