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C
Cande J, Namiki S, Qiu J, Korff W, Card GM, Shaevitz JW, et al. Optogenetic dissection of descending behavioral control in . Elife. 2018 ;7.
D
DeGennaro M, McBride CS, Seeholzer L, Nakagawa T, Dennis EJ, Goldman C, et al. orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET. Nature. 2013 ;498(7455):487-91.
Dine E, Toettcher JE. Optogenetic Reconstitution for Determining the Form and Function of Membraneless Organelles. Biochemistry. 2018 ;.
Ducker GS, Rabinowitz JD. One-Carbon Metabolism in Health and Disease. Cell Metab. 2016 ;.
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Gao J, Schwartz G, Berry MJ, Holmes P. An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns. Network. 2009 ;20(2):106-35.
Goglia AG, Wilson MZ, DiGiorno DB, Toettcher JE. Optogenetic Control of Ras/Erk Signaling Using the Phy-PIF System. Methods Mol Biol. 2017 ;1636:3-20.
H
Harder JL, Menon R, Otto EA, Zhou J, Eddy S, Wys NL, et al. Organoid single cell profiling identifies a transcriptional signature of glomerular disease. JCI Insight. 2019 ;4(1).
K
Kang JH, Um E, Diaz A, Driscoll H, Rodas MJ, Domansky K, et al. Optimization of Pathogen Capture in Flowing Fluids with Magnetic Nanoparticles. Small. 2015 ;11(42):5657-66.
Konovalova A, Silhavy TJ. Outer membrane lipoprotein biogenesis: Lol is not the end. Philos Trans R Soc Lond B Biol Sci. 2015 ;370(1679).
Konovalova A, Kahne DE, Silhavy TJ. Outer Membrane Biogenesis. Annu Rev Microbiol. 2017 ;71:539-556.
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Nadell CD, Bassler BL, Levin SA. Observing bacteria through the lens of social evolution. J Biol. 2008 ;7(7):27.
P
Patel AL, Shvartsman SY. Outstanding questions in developmental ERK signaling. Development. 2018 ;145(14).
Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 2019 ;176(4):844-855.e15.
Pilizota T, Shaevitz JW. Origins of Escherichia coli growth rate and cell shape changes at high external osmolality. Biophys J. 2014 ;107(8):1962-1969.
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Tikhonov M, Little SC, Gregor T. Only accessible information is useful: insights from gradient-mediated patterning. R Soc Open Sci. 2015 ;2(11):150486.
Toettcher JE, Castillo A, Tidor B, White JK. Oscillator sensitivity analysis in the presence of hidden conservation constraints. In Proceedings of the 48th IEEE Design Automation Conference. 2011.
Z
Zhao EM, Zhang Y, Mehl J, Park H, Lalwani MA, Toettcher JE, et al. Optogenetic regulation of engineered cellular metabolism for microbial chemical production. Nature. 2018 ;555(7698):683-687.