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2022
Singh AP, Wu P, Ryabichko S, Raimundo J, Swan M, Wieschaus E, et al. Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation. Cell Rep. 2022 ;38(12):110543.
Hoffman SM, Tang AY, Avalos JL. Optogenetics Illuminates Applications in Microbial Engineering. Annu Rev Chem Biomol Eng. 2022 ;.
2021
Choi LS, Shi C, Ashraf J, Sohrabi S, Murphy CT. Oleic Acid Protects Caenorhabditis Mothers From Mating-Induced Death and the Cost of Reproduction. Front Cell Dev Biol. 2021 ;9:690373.
Bagert JD, Mitchener MM, Patriotis AL, Dul BE, Wojcik F, Nacev BA, et al. Oncohistone mutations enhance chromatin remodeling and alter cell fates. Nat Chem Biol. 2021 ;17(4):403-411.
Bass AJ, Storey JD. The optimal discovery procedure for significance analysis of general gene expression studies. Bioinformatics. 2021 ;37(3):367-374.
Zhao EM, Lalwani MA, Chen J-M, Orillac P, Toettcher JE, Avalos JL. Optogenetic Amplification Circuits for Light-Induced Metabolic Control. ACS Synth Biol. 2021 ;10(5):1143-1154.
Lalwani MA, Kawabe H, Mays RL, Hoffman SM, Avalos JL. Optogenetic Control of Microbial Consortia Populations for Chemical Production. ACS Synth Biol. 2021 ;10(8):2015-2029.
Lalwani MA, Ip SS, Carrasco-López C, Day C, Zhao EM, Kawabe H, et al.. Optogenetic control of the lac operon for bacterial chemical and protein production. Nat Chem Biol. 2021 ;17(1):71-79.
Botti-Lodovico Y, Nair P, Nosamiefan D, Stremlau M, Schaffner S, Agignoae SV, et al. The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response. Viruses. 2021 ;13(8).
Huang J, Yuan Y, Zhao N, Pu D, Tang Q, Zhang S, et al. Orthosteric-allosteric dual inhibitors of PfHT1 as selective antimalarial agents. Proc Natl Acad Sci U S A. 2021 ;118(3).
Shim G, Devenport D, Cohen DJ. Overriding native cell coordination enhances external programming of collective cell migration. Proc Natl Acad Sci U S A. 2021 ;118(29).
2020
Ringel AE, Drijvers JM, Baker GJ, Catozzi A, García-Cañaveras JC, Gassaway BM, et al.. Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity. Cell. 2020 ;183(7):1848-1866.e26.
Gil AA, Carrasco-López C, Zhu L, Zhao EM, Ravindran PT, Wilson MZ, et al.. Optogenetic control of protein binding using light-switchable nanobodies. Nat Commun. 2020 ;11(1):4044.
Johnson HE, Djabrayan NJV, Shvartsman SY, Toettcher JE. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020 ;30(17):3414-3424.e3.
Carrasco-López C, García-Echauri SA, Kichuk T, Avalos JL. Optogenetics and biosensors set the stage for metabolic cybergenetics. Curr Opin Biotechnol. 2020 ;65:296-309.
2019
DeCandia AL, Leverett KN, vonHoldt BM. Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites. Parasit Vectors. 2019 ;12(1):488.
Silhavy TJ. Olaf Schneewind, 1961-2019: Scientist, Mentor, Friend. J Bacteriol. 2019 ;.
Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 2019 ;176(4):844-855.e15.
Patel AL, Yeung E, McGuire SE, Wu AY, Toettcher JE, Burdine RD, et al. Optimizing photoswitchable MEK. Proc Natl Acad Sci U S A. 2019 ;116(51):25756-25763.
Harder JL, Menon R, Otto EA, Zhou J, Eddy S, Wys NL, et al. Organoid single cell profiling identifies a transcriptional signature of glomerular disease. JCI Insight. 2019 ;4(1).
Ricci DP, Silhavy TJ. Outer Membrane Protein Insertion by the β-barrel Assembly Machine. EcoSal Plus. 2019 ;8(2).
2018
Cande J, Namiki S, Qiu J, Korff W, Card GM, Shaevitz JW, et al. Optogenetic dissection of descending behavioral control in . Elife. 2018 ;7.
Dine E, Toettcher JE. Optogenetic Reconstitution for Determining the Form and Function of Membraneless Organelles. Biochemistry. 2018 ;57(17):2432-2436.
Zhao EM, Zhang Y, Mehl J, Park H, Lalwani MA, Toettcher JE, et al. Optogenetic regulation of engineered cellular metabolism for microbial chemical production. Nature. 2018 ;555(7698):683-687.
Murray LA, Sheng X, Cristea IM. Orchestration of protein acetylation as a toggle for cellular defense and virus replication. Nat Commun. 2018 ;9(1):4967.