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2020
Sealfon RSG, Mariani LH, Kretzler M, Troyanskaya OG. Machine learning, the kidney, and genotype-phenotype analysis. Kidney Int. 2020 ;.
Nerger BA, Brun P-T, Nelson CM. Marangoni flows drive the alignment of fibrillar cell-laden hydrogels. Sci Adv. 2020 ;6(24):eaaz7748.
Kinoshita N, Hashimoto Y, Yasue N, Suzuki M, Cristea IM, Ueno N. Mechanical Stress Regulates Epithelial Tissue Integrity and Stiffness through the FGFR/Erk2 Signaling Pathway during Embryogenesis. Cell Rep. 2020 ;30(11):3875-3888.e3.
Huang X, Duddy OP, Silpe JE, Paczkowski JE, Cong J, Henke BR, et al. Mechanism underlying autoinducer recognition in the Vibrio cholerae DPO-VqmA quorum-sensing pathway. J Biol Chem. 2020 ;.
Liou CS, Sirk SJ, Diaz CAC, Klein AP, Fischer CR, Higginbottom SK, et al. A Metabolic Pathway for Activation of Dietary Glucosinolates by a Human Gut Symbiont. Cell. 2020 ;180(4):717-728.e19.
Li AM, Ducker GS, Li Y, Seoane JA, Xiao Y, Melemenidis S, et al. Metabolic Profiling Reveals a Dependency of Human Metastatic Breast Cancer on Mitochondrial Serine and One-Carbon Unit Metabolism. Mol Cancer Res. 2020 ;.
Hammer SK, Zhang Y, Avalos JL. Mitochondrial Compartmentalization Confers Specificity to the 2-Ketoacid Recursive Pathway: Increasing Isopentanol Production in Saccharomyces cerevisiae. ACS Synth Biol. 2020 ;.
Statt A, Casademunt H, Brangwynne CP, Panagiotopoulos AZ. Model for disordered proteins with strongly sequence-dependent liquid phase behavior. J Chem Phys. 2020 ;152(7):075101.
Laval K, Maturana CJ, Enquist LW. Mouse Footpad Inoculation Model to Study Viral-Induced Neuroinflammatory Responses. J Vis Exp. 2020 ;(160).
Li A, Mao D, Yoshimura A, Rosen PC, W Martin L, Gallant É, et al.. Multi-Omic Analyses Provide Links between Low-Dose Antibiotic Treatment and Induction of Secondary Metabolism in Burkholderia thailandensis. mBio. 2020 ;11(1).
2019
Caruso A, Martinie RJ, Bushin LB, Seyedsayamdost MR. Macrocyclization via an Arginine-Tyrosine Crosslink Broadens the Reaction Scope of Radical S-Adenosylmethionine Enzymes. J Am Chem Soc. 2019 ;141(42):16610-16614.
Minhas PS, Liu L, Moon PK, Joshi AU, Dove C, Mhatre S, et al. Macrophage de novo NAD+ synthesis specifies immune function in aging and inflammation. Nat Immunol. 2019 ;20(1):50-63.
Sargin D, Chottekalapanda RU, Perit KE, Yao V, Chu D, Sparks DW, et al. Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons. Mol Psychiatry. 2019 ;.
Maya S, Ploss A. Master of disguise: hepatitis delta virus packaging and spread facilitated by diverse viral envelope proteins. Hepatology. 2019 ;.
Hashimoto Y, Kinoshita N, Greco TM, Federspiel JD, Beltran PMJean, Ueno N, et al. Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos. Cell Syst. 2019 ;8(3):226-241.e7.
Yan J, Fei C, Mao S, Moreau A, Wingreen NS, Košmrlj A, et al.. Mechanical instability and interfacial energy drive biofilm morphogenesis. Elife. 2019 ;8.
Spurlin JW, Siedlik MJ, Nerger BA, Pang M-F, Jayaraman S, Zhang R, et al. Mesenchymal proteases and tissue fluidity remodel the extracellular matrix during airway epithelial branching in the embryonic avian lung. Development. 2019 ;.
Jang C, Hui S, Zeng X, Cowan AJ, Wang L, Chen L, et al. Metabolite Exchange between Mammalian Organs Quantified in Pigs. Cell Metab. 2019 ;.
Estrella MA, Du J, Chen L, Rath S, Prangley E, Chitrakar A, et al. The metabolites NADP+ and NADPH are the targets of the circadian protein Nocturnin (Curled). Nat Commun. 2019 ;10(1):2367.
Sugimoto Y, Camacho FR, Wang S, Chankhamjon P, Odabas A, Biswas A, et al. A metagenomic strategy for harnessing the chemical repertoire of the human microbiome. Science. 2019 ;.
Murray LA, Combs AN, Rekapalli P, Cristea IM. Methods for characterizing protein acetylation during viral infection. Methods Enzymol. 2019 ;626:587-620.
Zan J, Li Z, Tianero MDiarey, Davis J, Hill RT, Donia MS. A microbial factory for defensive kahalalides in a tripartite marine symbiosis. Science. 2019 ;364(6445).
Nerger BA, Brun P-T, Nelson CM. Microextrusion printing cell-laden networks of type I collagen with patterned fiber alignment and geometry. Soft Matter. 2019 ;.
Sanfilippo JE, Lorestani A, Koch MD, Bratton BP, Siryaporn A, Stone HA, et al. Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. Nat Microbiol. 2019 ;.
Bradley PH, Gibney PA, Botstein D, Troyanskaya OG, Rabinowitz JD. Minor Isozymes Tailor Yeast Metabolism to Carbon Availability. mSystems. 2019 ;4(1).