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2022
Stern T, Shvartsman SY, Wieschaus EF. Deconstructing gastrulation at single-cell resolution. Curr Biol. 2022 ;32(8):1861-1868.e7.
Klibaite U, Kislin M, Verpeut JL, Bergeler S, Sun X, Shaevitz JW, et al. Deep phenotyping reveals movement phenotypes in mouse neurodevelopmental models. Mol Autism. 2022 ;13(1):12.
Metsky HC, Welch NL, Pillai PP, Haradhvala NJ, Rumker L, Mantena S, et al. Designing sensitive viral diagnostics with machine learning. Nat Biotechnol. 2022 ;.
Sharma A, Schwarzbauer JE. Differential Regulation of Neurite Outgrowth and Growth Cone Morphology by 3D Fibronectin and Fibronectin-Collagen Extracellular Matrices. Mol Neurobiol. 2022 ;59(2):1112-1123.
Koch MD, Black ME, Han E, Shaevitz JW, Gitai Z. distinguishes surfaces by stiffness using retraction of type IV pili. Proc Natl Acad Sci U S A. 2022 ;119(20):e2119434119.
Li H, Gavis ER. The Drosophila Fragile X mental retardation protein modulates the neuronal cytoskeleton to limit dendritic arborization. Development. 2022 ;.
Keenan SE, Avdeeva M, Yang L, Alber DS, Wieschaus EF, Shvartsman SY. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022 ;119(15):e2112892119.
Greco TM, Secker C, Ramos ESilva, Federspiel JD, Liu J-P, Perez AM, et al. Dynamics of huntingtin protein interactions in the striatum identifies candidate modifiers of Huntington disease. Cell Syst. 2022 ;13(4):304-320.e5.
2021
Wong AK, Sealfon RSG, Theesfeld CL, Troyanskaya OG. Decoding disease: from genomes to networks to phenotypes. Nat Rev Genet. 2021 ;22(12):774-790.
Hallinen KM, Dempsey R, Scholz M, Yu X, Linder A, Randi F, et al. Decoding locomotion from population neural activity in moving . Elife. 2021 ;10.
Zhang Y, Xu B, Weiner BG, Meir Y, Wingreen NS. Decoding the physical principles of two-component biomolecular phase separation. Elife. 2021 ;10.
Zhao Z, Tian D, McBride CS. Development of a pan-neuronal genetic driver in mosquitoes. Cell Rep Methods. 2021 ;1(3).
Kumar S, Nandi A, Singh S, Regulapati R, Li N, Tobias JW, et al. Dll1 quiescent tumor stem cells drive chemoresistance in breast cancer through NF-κB survival pathway. Nat Commun. 2021 ;12(1):432.
Howard TR, Crow MS, Greco TM, Lum KK, Li T, Cristea IM. The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle. mSystems. 2021 ;6(3):e0039721.
Voronkov M, Cocchiaro B, Stock JB. Does a hypoxic injury from a non-fatal overdose lead to an Alzheimer Disease?. Neurochem Int. 2021 ;143:104936.
Wu A, Zhi J, Tian T, Cihan A, Cevher MA, Liu Z, et al. DOT1L complex regulates transcriptional initiation in human erythroleukemic cells. Proc Natl Acad Sci U S A. 2021 ;118(27).
Etzion-Fuchs A, Todd DA, Singh M. dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains. Nucleic Acids Res. 2021 ;49(13):e78.
Lemke SB, Nelson CM. Dynamic changes in epithelial cell packing during tissue morphogenesis. Curr Biol. 2021 ;31(18):R1098-R1110.
Schröder HV, Zhang Y, A Link J. Dynamic covalent self-assembly of mechanically interlocked molecules solely made from peptides. Nat Chem. 2021 ;13(9):850-857.
Lovelett RJ, Zhao EM, Lalwani MA, Toettcher JE, Kevrekidis IG, Avalos JL. Dynamical Modeling of Optogenetic Circuits in Yeast for Metabolic Engineering Applications. ACS Synth Biol. 2021 ;10(2):219-227.
2020
Munro D, Singh M. DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction. Bioinformatics. 2020 ;.
Gaydosh L, Mitchell C, Notterman D, Schneper L, Brooks-Gunn J, Wagner B, et al. Demographic and developmental patterns in telomere length across adolescence. Biodemography Soc Biol. 2020 ;66(3-4):208-219.
Zhao EM, Lalwani MA, Lovelett RJ, García-Echauri SA, Hoffman SM, Gonzalez CL, et al.. Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering. ACS Synth Biol. 2020 ;9(12):3254-3266.
Smits CM, Shvartsman SY. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020 ;137:193-217.
Li W, Shen M, Jiang Y-Z, Zhang R, Zheng H, Wei Y, et al. Deubiquitinase USP20 promotes breast cancer metastasis by stabilizing SNAI2. Genes Dev. 2020 ;34(19-20):1310-1315.