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Wang S-W, Bitbol A-F, Wingreen NS. Revealing evolutionary constraints on proteins through sequence analysis. PLoS Comput Biol. 2019 ;15(4):e1007010.
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Bitbol A-F, Dwyer RS, Colwell LJ, Wingreen NS. Inferring interaction partners from protein sequences. Proc Natl Acad Sci U S A. 2016 ;113(43):12180-12185.
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Ochoa A, Singh M. Domain prediction with probabilistic directional context. Bioinformatics. 2017 ;33(16):2471-2478.
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Frietze KK, Pappy AL, Melson JW, O'Driscoll EE, Tyler CM, Perlman DH, et al. Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins. BMC Immunol. 2016 ;17(1):24.