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2022
Valentino M, Ortega BM, Ulrich B, Doyle DA, Farnum ED, Joiner DA, et al. Computational modeling offers new insight into Drosophila germ granule development. Biophys J. 2022 ;121(8):1465-1482.
Keenan SE, Avdeeva M, Yang L, Alber DS, Wieschaus EF, Shvartsman SY. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022 ;119(15):e2112892119.
Seyboldt R, Lavoie J, Henry A, Vanaret J, Petkova MD, Gregor T, et al. Latent space of a small genetic network: Geometry of dynamics and information. Proc Natl Acad Sci U S A. 2022 ;119(26):e2113651119.
Singh AP, Wu P, Ryabichko S, Raimundo J, Swan M, Wieschaus E, et al. Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation. Cell Rep. 2022 ;38(12):110543.
Colonnetta MM, Goyal Y, Johnson HE, Syal S, Schedl P, Deshpande G. Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo. PLoS Genet. 2022 ;18(1):e1010002.
Voortman L, Anderson C, Urban E, Yuan L, Tran S, Neuhaus-Follini A, et al. Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in flies. Dev Cell. 2022 ;57(15):1817-1832.e5.
Ibragimov AN, Bylino OV, Kyrchanova OV, Shidlovskii YV, White R, Schedl P, et al. The Variable CTCF Site from Drosophila melanogaster Ubx Gene is Redundant and Has no Insulator Activity. Dokl Biochem Biophys. 2022 ;505(1):173-175.
2021
Gilmutdinov R, Kozlov EN, Yakovlev KV, Olenina LV, Kotov AA, Barr J, et al. The 3'UTR of the Drosophila CPEB translation factor gene orb2 plays a crucial role in spermatogenesis. Development. 2021 ;148(17).
Colonnetta MM, Lym LR, Wilkins L, Kappes G, Castro EA, Ryder PV, et al. Antagonism between and Torso receptor regulates transcriptional quiescence underlying germline/soma distinction. Elife. 2021 ;10.
Erokhin M, Gorbenko F, Lomaev D, Mazina MYu, Mikhailova A, Garaev AK, et al. Boundaries potentiate polycomb response element-mediated silencing. BMC Biol. 2021 ;19(1):113.
Patel AL, Zhang L, Keenan SE, Rushlow CA, Fradin C, Shvartsman SY. Capicua is a fast-acting transcriptional brake. Curr Biol. 2021 ;31(16):3639-3647.e5.
Colonnetta MM, Abrahante JE, Schedl P, Gohl DM, Deshpande G. CLAMP regulates zygotic genome activation in Drosophila embryos. Genetics. 2021 ;219(2).
Doherty CA, Diegmiller R, Kapasiawala M, Gavis ER, Shvartsman SY. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021 ;56(6):860-870.e8.
Chetverina D, Erokhin M, Schedl P. GAGA factor: a multifunctional pioneering chromatin protein. Cell Mol Life Sci. 2021 ;78(9):4125-4141.
Ing-Simmons E, Vaid R, Bing XYang, Levine M, Mannervik M, Vaquerizas JM. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021 ;53(4):487-499.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Mapping of functional elements of the Fab-6 boundary involved in the regulation of the Abd-B hox gene in Drosophila melanogaster. Sci Rep. 2021 ;11(1):4156.
Marmion RA, Yang L, Goyal Y, Jindal GA, Wetzel JL, Singh M, et al. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Mol Biol Cell. 2021 ;32(9):974-983.
Kan L, Ott S, Joseph B, Park ESil, Dai W, Kleiner RE, et al. A neural mA/Ythdf pathway is required for learning and memory in Drosophila. Nat Commun. 2021 ;12(1):1458.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Redundant enhancers in the iab-5 domain cooperatively activate Abd-B in the A5 and A6 abdominal segments of Drosophila. Development. 2021 ;148(19).
Huang S-K, Whitney PH, Dutta S, Shvartsman SY, Rushlow CA. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021 ;31(22):5102-5110.e5.
Shidlovskii YV, Bylino OV, Shaposhnikov AV, Kachaev ZM, Lebedeva LA, Kolesnik VV, et al. Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in . Int J Mol Sci. 2021 ;22(6).
Falahati H, Hur W, Di Talia S, Wieschaus E. Temperature-Induced uncoupling of cell cycle regulators. Dev Biol. 2021 ;470:147-153.
McFann S, Dutta S, Toettcher JE, Shvartsman SY. Temporal integration of inductive cues on the way to gastrulation. Proc Natl Acad Sci U S A. 2021 ;118(23).
2020
Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman SY, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020 ;31(4):235-243.
Song Y, Shvartsman SY. Chemical Embryology Redux: Metabolic Control of Development. Trends Genet. 2020 ;36(8):577-586.