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2022
Zeng X, Xing X, Gupta M, Keber FC, Lopez JG, Lee Y-CJ, et al. Gut bacterial nutrient preferences quantified in vivo. Cell. 2022 ;185(18):3441-3456.e19.
Ruiz N, Silhavy TJ. How Escherichia coli Became the Flagship Bacterium of Molecular Biology. J Bacteriol. 2022 ;204(9):e0023022.
Tsitsiklis A, Osborne CM, Kamm J, Williamson K, Kalantar K, Dudas G, et al. Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics. Lancet Microbe. 2022 ;3(4):e284-e293.
Martínez-Calvo A, Bhattacharjee T, R Bay K, Luu HNghi, Hancock AM, Wingreen NS, et al.. Morphological instability and roughening of growing 3D bacterial colonies. Proc Natl Acad Sci U S A. 2022 ;119(43):e2208019119.
Lopez JG, Wingreen NS. Noisy metabolism can promote microbial cross-feeding. Elife. 2022 ;11.
López JMontaño, Duran L, Avalos JL. Physiological limitations and opportunities in microbial metabolic engineering. Nat Rev Microbiol. 2022 ;20(1):35-48.
Bridges AA, Prentice JA, Wingreen NS, Bassler BL. Signal Transduction Network Principles Underlying Bacterial Collective Behaviors. Annu Rev Microbiol. 2022 ;76:235-257.
Ellison CK, Fei C, Dalia TN, Wingreen NS, Dalia AB, Shaevitz JW, et al. Subcellular localization of type IV pili regulates bacterial multicellular development. Nat Commun. 2022 ;13(1):6334.
2021
Narla AV, Borenstein DBruce, Wingreen NS. A biophysical limit for quorum sensing in biofilms. Proc Natl Acad Sci U S A. 2021 ;118(21).
Shim S, Khodaparast S, Lai C-Y, Yan J, Ault JT, Rallabandi B, et al. CO-Driven diffusiophoresis for maintaining a bacteria-free surface. Soft Matter. 2021 ;17(9):2568-2576.
Murawski AM, Rittenbach K, DeCoste CJ, Laevsky G, Brynildsen MP. Counting Chromosomes in Individual Bacteria to Quantify Their Impacts on Persistence. Methods Mol Biol. 2021 ;2357:125-146.
Yang JQ, Sanfilippo JE, Abbasi N, Gitai Z, Bassler BL, Stone HA. Evidence for biosurfactant-induced flow in corners and bacterial spreading in unsaturated porous media. Proc Natl Acad Sci U S A. 2021 ;118(38).
Covington BC, Xu F, Seyedsayamdost MR. A Natural Product Chemist's Guide to Unlocking Silent Biosynthetic Gene Clusters. Annu Rev Biochem. 2021 ;90:763-788.
Sivaloganathan DM, Brynildsen MP. Phagosome-Bacteria Interactions from the Bottom Up. Annu Rev Chem Biomol Eng. 2021 ;12:309-331.
Duddy OP, Bassler BL. Quorum sensing across bacterial and viral domains. PLoS Pathog. 2021 ;17(1):e1009074.
Valastyan JS, Kraml CM, Pelczer I, Ferrante T, Bassler BL. Saccharomyces cerevisiae Requires To Produce 4-Hydroxy-5-Methylfuran-3(2H)-One, a Mimic of the Bacterial Quorum-Sensing Autoinducer AI-2. mBio. 2021 ;12(2).
2020
Li Z, Liu B, Li SHsin-Jung, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020 ;16(8):e1008156.
Javdan B, Lopez JG, Chankhamjon P, Lee Y-CJ, Hull R, Wu Q, et al. Personalized Mapping of Drug Metabolism by the Human Gut Microbiome. Cell. 2020 ;181(7):1661-1679.e22.
Doane MP, Morris MM, Papudeshi B, Allen L, Pande D, Haggerty JM, et al. The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge. Microbiome. 2020 ;8(1):93.
2019
Wu L, Shen M, Li J, Huang S, Li Z, Yan Z, et al. Cooperation between partial-nitrification, complete ammonia oxidation (comammox), and anaerobic ammonia oxidation (anammox) in sludge digestion liquid for nitrogen removal. Environ Pollut. 2019 ;254(Pt A):112965.
Balaban NQ, Helaine S, Lewis K, Ackermann M, Aldridge B, Andersson DI, et al. Definitions and guidelines for research on antibiotic persistence. Nat Rev Microbiol. 2019 ;17(7):441-448.
Tuttle RN, Demko AM, Patin NV, Kapono CA, Donia MS, Dorrestein P, et al. Detection of Natural Products and Their Producers in Ocean Sediments. Appl Environ Microbiol. 2019 ;85(8).
Xu F, Wu Y, Zhang C, Davis KM, Moon K, Bushin LB, et al. A genetics-free method for high-throughput discovery of cryptic microbial metabolites. Nat Chem Biol. 2019 ;15(2):161-168.
Sanfilippo JE, Lorestani A, Koch MD, Bratton BP, Siryaporn A, Stone HA, et al. Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. Nat Microbiol. 2019 ;4(8):1274-1281.
Braffman NR, Piscotta FJ, Hauver J, Campbell EA, A Link J, Darst SA. Structural mechanism of transcription inhibition by lasso peptides microcin J25 and capistruin. Proc Natl Acad Sci U S A. 2019 ;116(4):1273-1278.