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2021
Koch MD, Fei C, Wingreen NS, Shaevitz JW, Gitai Z. Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili. Proc Natl Acad Sci U S A. 2021 ;118(8).
Saad-Roy CM, Grenfell BT, Levin SA, van den Driessche P, Wingreen NS. Evolution of an asymptomatic first stage of infection in a heterogeneous population. J R Soc Interface. 2021 ;18(179):20210175.
Tkačik G, Gregor T. The many bits of positional information. Development. 2021 ;148(2).
Diegmiller R, Zhang L, Gameiro M, Barr J, Alsous JImran, Schedl P, et al. Mapping parameter spaces of biological switches. PLoS Comput Biol. 2021 ;17(2):e1008711.
Cho S, Lee G, Pickering BF, Jang C, Park JH, He L, et al. mTORC1 promotes cell growth via mA-dependent mRNA degradation. Mol Cell. 2021 ;81(10):2064-2075.e8.
Wang MD, Nicodemi M, Dekker NH, Gregor T, Holcman D, van Oijen AM, et al. Physics meets biology: The joining of two forces to further our understanding of cellular function. Mol Cell. 2021 ;81(15):3033-3037.
2020
Saad-Roy CM, Wingreen NS, Levin SA, Grenfell BT. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proc Natl Acad Sci U S A. 2020 ;117(21):11541-11550.
Rossine FW, Martinez-Garcia R, Sgro AE, Gregor T, Tarnita CE. Eco-evolutionary significance of "loners". PLoS Biol. 2020 ;18(3):e3000642.
Silver BB, Wolf AE, Lee J, Pang M-F, Nelson CM. Epithelial tissue geometry directs emergence of bioelectric field and pattern of proliferation. Mol Biol Cell. 2020 ;31(16):1691-1702.
Yeung E, McFann S, Marsh L, Dufresne E, Filippi S, Harrington HA, et al. Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. Curr Biol. 2020 ;30(5):877-882.e6.
Li Z, Liu B, Li SHsin-Jung, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020 ;16(8):e1008156.
Sivaloganathan DM, Wan X, Brynildsen MP. Quantifying Nitric Oxide Flux Distributions. Methods Mol Biol. 2020 ;2088:161-188.
Grose C, Enquist LW. The round trip model for severe herpes zoster caused by live attenuated varicella vaccine virus. J Med Virol. 2020 ;92(8):938-940.
Leicher R, Ge EJ, Lin X, Reynolds MJ, Xie W, Walz T, et al. Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin. Proc Natl Acad Sci U S A. 2020 ;117(48):30465-30475.
2019
Liverani C, De Vita A, Minardi S, Kang Y, Mercatali L, Amadori D, et al. A biomimetic 3D model of hypoxia-driven cancer progression. Sci Rep. 2019 ;9(1):12263.
Lehmann R, Lee CM, Shugart EC, Benedetti M, R Charo A, Gartner Z, et al. Human organoids: a new dimension in cell biology. Mol Biol Cell. 2019 ;30(10):1129-1137.
Simsek ANihat, Braeutigam A, Koch MD, Shaevitz JW, Huang Y, Gompper G, et al. Substrate-rigidity dependent migration of an idealized twitching bacterium. Soft Matter. 2019 ;15(30):6224-6236.
2018
Shi Z, Graber ZT, Baumgart T, Stone HA, Cohen AE. Cell Membranes Resist Flow. Cell. 2018 ;175(7):1769-1779.e13.
Yao V, Wong AK, Troyanskaya OG. Enabling Precision Medicine through Integrative Network Models. J Mol Biol. 2018 ;430(18 Pt A):2913-2923.
Tanner LBahati, Goglia AG, Wei MH, Sehgal T, Parsons LR, Park JO, et al. Four Key Steps Control Glycolytic Flux in Mammalian Cells. Cell Syst. 2018 ;7(1):49-62.e8.
Ali MZulfikar, Wingreen NS, Mukhopadhyay R. Hidden long evolutionary memory in a model biochemical network. Phys Rev E. 2018 ;97(4-1):040401.
Celià-Terrassa T, Bastian C, Liu DD, Ell B, Aiello NM, Wei Y, et al.. Hysteresis control of epithelial-mesenchymal transition dynamics conveys a distinct program with enhanced metastatic ability. Nat Commun. 2018 ;9(1):5005.
Patel AL, Shvartsman SY. Outstanding questions in developmental ERK signaling. Development. 2018 ;145(14).
Rale MJ, Kadzik RS, Petry S. Phase Transitioning the Centrosome into a Microtubule Nucleator. Biochemistry. 2018 ;57(1):30-37.
May KL, Silhavy TJ. The Phospholipase PldA Regulates Outer Membrane Homeostasis via Lipid Signaling. mBio. 2018 ;9(2).