Publications

Search Publications
Export 97 results:
Author Title [ Year(Asc)]
Filters: Keyword is Models, Biological  [Clear All Filters]
2020
Saad-Roy CM, Wingreen NS, Levin SA, Grenfell BT. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proc Natl Acad Sci U S A. 2020 ;117(21):11541-11550.
Rossine FW, Martinez-Garcia R, Sgro AE, Gregor T, Tarnita CE. Eco-evolutionary significance of "loners". PLoS Biol. 2020 ;18(3):e3000642.
Li Z, Liu B, Li SHsin-Jung, King CG, Gitai Z, Wingreen NS. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020 ;16(8):e1008156.
Sivaloganathan DM, Wan X, Brynildsen MP. Quantifying Nitric Oxide Flux Distributions. Methods Mol Biol. 2020 ;2088:161-188.
Leicher R, Ge EJ, Lin X, Reynolds MJ, Xie W, Walz T, et al. Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin. Proc Natl Acad Sci U S A. 2020 ;117(48):30465-30475.
2019
Liverani C, De Vita A, Minardi S, Kang Y, Mercatali L, Amadori D, et al. A biomimetic 3D model of hypoxia-driven cancer progression. Sci Rep. 2019 ;9(1):12263.
Lehmann R, Lee CM, Shugart EC, Benedetti M, R Charo A, Gartner Z, et al. Human organoids: a new dimension in cell biology. Mol Biol Cell. 2019 ;30(10):1129-1137.
Simsek ANihat, Braeutigam A, Koch MD, Shaevitz JW, Huang Y, Gompper G, et al. Substrate-rigidity dependent migration of an idealized twitching bacterium. Soft Matter. 2019 ;15(30):6224-6236.
2018
Shi Z, Graber ZT, Baumgart T, Stone HA, Cohen AE. Cell Membranes Resist Flow. Cell. 2018 ;175(7):1769-1779.e13.
Yao V, Wong AK, Troyanskaya OG. Enabling Precision Medicine through Integrative Network Models. J Mol Biol. 2018 ;430(18 Pt A):2913-2923.
Tanner LBahati, Goglia AG, Wei MH, Sehgal T, Parsons LR, Park JO, et al. Four Key Steps Control Glycolytic Flux in Mammalian Cells. Cell Syst. 2018 ;7(1):49-62.e8.
Ali MZulfikar, Wingreen NS, Mukhopadhyay R. Hidden long evolutionary memory in a model biochemical network. Phys Rev E. 2018 ;97(4-1):040401.
Celià-Terrassa T, Bastian C, Liu DD, Ell B, Aiello NM, Wei Y, et al.. Hysteresis control of epithelial-mesenchymal transition dynamics conveys a distinct program with enhanced metastatic ability. Nat Commun. 2018 ;9(1):5005.
Patel AL, Shvartsman SY. Outstanding questions in developmental ERK signaling. Development. 2018 ;145(14).
Rale MJ, Kadzik RS, Petry S. Phase Transitioning the Centrosome into a Microtubule Nucleator. Biochemistry. 2018 ;57(1):30-37.
May KL, Silhavy TJ. The Phospholipase PldA Regulates Outer Membrane Homeostasis via Lipid Signaling. mBio. 2018 ;9(2).
Jang C, Hui S, Lu W, Cowan AJ, Morscher RJ, Lee G, et al. The Small Intestine Converts Dietary Fructose into Glucose and Organic Acids. Cell Metab. 2018 ;27(2):351-361.e3.
Eickhoff MJ, Bassler BL. SnapShot: Bacterial Quorum Sensing. Cell. 2018 ;174(5):1328-1328.e1.
Diegmiller R, Montanelli H, Muratov CB, Shvartsman SY. Spherical Caps in Cell Polarization. Biophys J. 2018 ;115(1):26-30.
Anlas AA, Nelson CM. Tissue mechanics regulates form, function, and dysfunction. Curr Opin Cell Biol. 2018 ;54:98-105.
2017
Tassan J-P, Wühr M, Hatte G, Kubiak J. Asymmetries in Cell Division, Cell Size, and Furrowing in the Xenopus laevis Embryo. Results Probl Cell Differ. 2017 ;61:243-260.
Gregor T. Beyond D'Arcy Thompson: Future challenges for quantitative biology. Mech Dev. 2017 ;145:10-12.
Siedlik MJ, Manivannan S, Kevrekidis IG, Nelson CM. Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives. Biophys J. 2017 ;112(11):2419-2427.
Misra M, Audoly B, Shvartsman SY. Complex structures from patterned cell sheets. Philos Trans R Soc Lond B Biol Sci. 2017 ;372(1720).
Varner VD, Nelson CM. Computational models of airway branching morphogenesis. Semin Cell Dev Biol. 2017 ;67:170-176.