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2020
Hoshino A, Kim HSang, Bojmar L, Gyan KEnnu, Cioffi M, Hernandez J, et al. Extracellular Vesicle and Particle Biomarkers Define Multiple Human Cancers. Cell. 2020 ;182(4):1044-1061.e18.
Adhikari S, Nice EC, Deutsch EW, Lane L, Omenn GS, Pennington SR, et al. A high-stringency blueprint of the human proteome. Nat Commun. 2020 ;11(1):5301.
Cao WXi, Kabelitz S, Gupta M, Yeung E, Lin S, Rammelt C, et al. Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition. Cell Rep. 2020 ;31(12):107783.
Omenn GS, Lane L, Overall CM, Cristea IM, Corrales FJ, Lindskog C, et al. Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project. J Proteome Res. 2020 ;19(12):4735-4746.
Kennedy MA, Hofstadter WA, Cristea IM. TRANSPIRE: A Computational Pipeline to Elucidate Intracellular Protein Movements from Spatial Proteomics Data Sets. J Am Soc Mass Spectrom. 2020 ;31(7):1422-1439.
2019
Federspiel JD, Tandon P, Wilczewski CM, Wasson L, Herring LE, Venkatesh SS, et al. Conservation and divergence of protein pathways in the vertebrate heart. PLoS Biol. 2019 ;17(9):e3000437.
Hashimoto Y, Greco TM, Cristea IM. Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology. Adv Exp Med Biol. 2019 ;1140:143-154.
Cristea IM, Lilley KS. Editorial overview: Untangling proteome organization in space and time. Curr Opin Chem Biol. 2019 ;48:A1-A4.
Federspiel JD, Greco TM, Lum KK, Cristea IM. Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics. Mol Cell Proteomics. 2019 ;18(8 suppl 1):S92-S113.
Hashimoto Y, Kinoshita N, Greco TM, Federspiel JD, Beltran PMJean, Ueno N, et al. Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos. Cell Syst. 2019 ;8(3):226-241.e7.
Murray LA, Combs AN, Rekapalli P, Cristea IM. Methods for characterizing protein acetylation during viral infection. Methods Enzymol. 2019 ;626:587-620.
Nguyen T, Pappireddi N, Wühr M. Proteomics of nucleocytoplasmic partitioning. Curr Opin Chem Biol. 2019 ;48:55-63.
Pappireddi N, Martin L, Wühr M. A Review on Quantitative Multiplexed Proteomics. Chembiochem. 2019 ;20(10):1210-1224.
2018
Aebersold R, Agar JN, I Amster J, Baker MS, Bertozzi CR, Boja ES, et al. How many human proteoforms are there?. Nat Chem Biol. 2018 ;14(3):206-214.
Lum KK, Song B, Federspiel JD, Diner BA, Howard T, Cristea IM. Interactome and Proteome Dynamics Uncover Immune Modulatory Associations of the Pathogen Sensing Factor cGAS. Cell Syst. 2018 ;7(6):627-642.e6.
Sonnett M, Gupta M, Nguyen T, Wühr M. Quantitative Proteomics for Xenopus Embryos II, Data Analysis. Methods Mol Biol. 2018 ;1865:195-215.
2017
Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, et al. Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes. Sci Rep. 2017 ;7(1):12685.
Beltran PMJean, Cook KC, Cristea IM. Exploring and Exploiting Proteome Organization during Viral Infection. J Virol. 2017 ;91(18).
Presler M, Van Itallie E, Klein AM, Kunz R, Coughlin ML, Peshkin L, et al. Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the egg. Proc Natl Acad Sci U S A. 2017 ;114(50):E10838-E10847.
Carabetta VJ, Cristea IM. Regulation, Function, and Detection of Protein Acetylation in Bacteria. J Bacteriol. 2017 ;199(16).
2016
Li X, Zhang R, Patena W, Gang SS, Blum SR, Ivanova N, et al. An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii. Plant Cell. 2016 ;28(2):367-87.
Ron-Harel N, Santos D, Ghergurovich JM, Sage PT, Reddy A, Lovitch SB, et al. Mitochondrial Biogenesis and Proteome Remodeling Promote One-Carbon Metabolism for T Cell Activation. Cell Metab. 2016 ;24(1):104-17.
Beltran PMJean, Mathias RA, Cristea IM. A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection. Cell Syst. 2016 ;3(4):361-373.e6.
Lum KK, Cristea IM. Proteomic approaches to uncovering virus-host protein interactions during the progression of viral infection. Expert Rev Proteomics. 2016 ;13(3):325-40.