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Nguyen JP, Bratton BP, Shaevitz JW. Biophysical Measurements of Bacterial Cell Shape. Methods Mol Biol. 2016 ;1440:227-45.
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Giovannucci A, Friedrich J, Gunn P, Kalfon J, Brown BL, Koay SAnn, et al. CaImAn an open source tool for scalable calcium imaging data analysis. Elife. 2019 ;8.
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Gjorevski N, Piotrowski AS, Varner VD, Nelson CM. Dynamic tensile forces drive collective cell migration through three-dimensional extracellular matrices. Sci Rep. 2015 ;5:11458.
Lim B, Dsilva CJ, Levario TJ, Lu H, Schüpbach T, Kevrekidis IG, et al.. Dynamics of Inductive ERK Signaling in the Drosophila Embryo. Curr Biol. 2015 ;25(13):1784-90.
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Sgro AE, Schwab DJ, Noorbakhsh J, Mestler T, Mehta P, Gregor T. From intracellular signaling to population oscillations: bridging size- and time-scales in collective behavior. Mol Syst Biol. 2015 ;11(1):779.
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Levario TJ, Lim B, Shvartsman SY, Lu H. Microfluidics for High-Throughput Quantitative Studies of Early Development. Annu Rev Biomed Eng. 2016 ;18:285-309.
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Badura A, Verpeut JL, Metzger JW, Pereira TD, Pisano TJ, Deverett B, et al. Normal cognitive and social development require posterior cerebellar activity. Elife. 2018 ;7.
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Goyal Y, Levario TJ, Mattingly HH, Holmes S, Shvartsman SY, Lu H. Parallel imaging of embryos for quantitative analysis of genetic perturbations of the Ras pathway. Dis Model Mech. 2017 ;10(7):923-929.
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Chen D, Aw WYih, Devenport D, Torquato S. Structural Characterization and Statistical-Mechanical Model of Epidermal Patterns. Biophys J. 2016 ;111(11):2534-2545.
Schwartz G, Taylor S, Fisher C, Harris R, Berry MJ. Synchronized firing among retinal ganglion cells signals motion reversal. Neuron. 2007 ;55(6):958-69.
Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis IG, Singer A, et al.. Synthesizing developmental trajectories. PLoS Comput Biol. 2017 ;13(9):e1005742.
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Stern T, Shvartsman SY, Wieschaus EF. Template-based mapping of dynamic motifs in tissue morphogenesis. PLoS Comput Biol. 2020 ;16(8):e1008049.
Pang M-F, Siedlik MJ, Han S, Stallings-Mann M, Radisky DC, Nelson CM. Tissue Stiffness and Hypoxia Modulate the Integrin-Linked Kinase ILK to Control Breast Cancer Stem-like Cells. Cancer Res. 2016 ;76(18):5277-87.