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Berry MJ, Brivanlou IH, Jordan TA, Meister M. Anticipation of moving stimuli by the retina. Nature. 1999 ;398(6725):334-8.
Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. PLoS Comput Biol. 2015 ;11(7):e1004304.
Johnson HE, Toettcher JE. Illuminating developmental biology with cellular optogenetics. Curr Opin Biotechnol. 2018 ;52:42-48.
Koch MD, Shaevitz JW. Introduction to Optical Tweezers. Methods Mol Biol. 2017 ;1486:3-24.
Armbruster U, L Carrillo R, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, et al. Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. 2014 ;5:5439.
Toettcher JE, Gong D, Lim WA, Weiner OD. Light control of plasma membrane recruitment using the Phy-PIF system. Methods Enzymol. 2011 ;497:409-23.
Zhao EM, Suek N, Wilson MZ, Dine E, Pannucci NL, Gitai Z, et al. Light-based control of metabolic flux through assembly of synthetic organelles. Nat Chem Biol. 2019 ;15(6):589-597.
Toettcher JE, Gong D, Lim WA, Weiner OD. Light-based feedback for controlling intracellular signaling dynamics. Nat Methods. 2011 ;8(10):837-9.
Perlaza K, Toutkoushian H, Boone M, Lam M, Iwai M, Jonikas MC, et al. The Mars1 kinase confers photoprotection through signaling in the chloroplast unfolded protein response. Elife. 2019 ;8.
Zhao EM, Zhang Y, Mehl J, Park H, Lalwani MA, Toettcher JE, et al. Optogenetic regulation of engineered cellular metabolism for microbial chemical production. Nature. 2018 ;555(7698):683-687.
Toettcher JE, Voigt CA, Weiner OD, Lim WA. The promise of optogenetics in cell biology: interrogating molecular circuits in space and time. Nat Methods. 2011 ;8(1):35-8.
Shin Y, Berry J, Pannucci N, Haataja MP, Toettcher JE, Brangwynne CP. Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets. Cell. 2017 ;168(1-2):159-171.e14.
Johnson HE, Goyal Y, Pannucci NL, Schüpbach T, Shvartsman SY, Toettcher JE. The Spatiotemporal Limits of Developmental Erk Signaling. Dev Cell. 2017 ;40(2):185-192.
Wilson MZ, Ravindran PT, Lim WA, Toettcher JE. Tracing Information Flow from Erk to Target Gene Induction Reveals Mechanisms of Dynamic and Combinatorial Control. Mol Cell. 2017 ;67(5):757-769.e5.
M Amin J, Petry S, Yang H, Shaevitz JW. Uniform intensity in multifocal microscopy using a spatial light modulator. PLoS One. 2020 ;15(3):e0230217.