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Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Selene: a PyTorch-based deep learning library for sequence data. Nat Methods. 2019 ;16(4):315-318.
Ochoa A, Singh M. Domain prediction with probabilistic directional context. Bioinformatics. 2017 ;33(16):2471-2478.
Kang YGwi, Lee JTaek, Kang JYeal, Kim GHye, Kim TKyun. Analysis of Longitudinal Outcome Data with Missing Values in Total Knee Arthroplasty. J Arthroplasty. 2016 ;31(1):81-6.
Prentice JS, Marre O, Ioffe ML, Loback AR, Tkačik G, Berry MJ. Error-Robust Modes of the Retinal Population Code. PLoS Comput Biol. 2016 ;12(11):e1005148.
Zhou J, Troyanskaya OG. Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states. Nat Commun. 2016 ;7:10528.
Hao W, Song M, Storey JD. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics. 2016 ;32(5):713-21.
Gopalan P, Hao W, Blei DM, Storey JD. Scaling probabilistic models of genetic variation to millions of humans. Nat Genet. 2016 ;48(12):1587-1590.
Snir S, vonHoldt BM, Pellegrini M. A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput Biol. 2016 ;12(11):e1005183.
Ochoa A, Storey JD, Llinás M, Singh M. Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput Biol. 2015 ;11(11):e1004509.
Chung NChristophe, Storey JD. Statistical significance of variables driving systematic variation in high-dimensional data. Bioinformatics. 2015 ;31(4):545-54.
Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ, et al.. Thermodynamics and signatures of criticality in a network of neurons. Proc Natl Acad Sci U S A. 2015 ;112(37):11508-13.