Publications
Computational modeling offers new insight into Drosophila germ granule development. Biophys J. 2022 ;121(8):1465-1482.
. Transmural pressure signals through retinoic acid to regulate lung branching. Development. 2022 ;149(2).
. A biophysical limit for quorum sensing in biofilms. Proc Natl Acad Sci U S A. 2021 ;118(21).
. Hierarchical transitions and fractal wrinkling drive bacterial pellicle morphogenesis. Proc Natl Acad Sci U S A. 2021 ;118(20).
. Mapping parameter spaces of biological switches. PLoS Comput Biol. 2021 ;17(2):e1008711.
. Physics meets biology: The joining of two forces to further our understanding of cellular function. Mol Cell. 2021 ;81(15):3033-3037.
. Mechanics of a multilayer epithelium instruct tumour architecture and function. Nature. 2020 ;585(7825):433-439.
. Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. PLoS Genet. 2019 ;15(9):e1008382.
. Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo. Biophys J. 2019 ;117(4):743-750.
. Substrate-rigidity dependent migration of an idealized twitching bacterium. Soft Matter. 2019 ;15(30):6224-6236.
. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nat Genet. 2018 ;50(8):1171-1179.
. Protein Phase Separation Provides Long-Term Memory of Transient Spatial Stimuli. Cell Syst. 2018 ;6(6):655-663.e5.
. Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives. Biophys J. 2017 ;112(11):2419-2427.
. Computational models of airway branching morphogenesis. Semin Cell Dev Biol. 2017 ;67:170-176.
. Microfabricated tissues for investigating traction forces involved in cell migration and tissue morphogenesis. Cell Mol Life Sci. 2017 ;74(10):1819-1834.
. mTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein. Mol Cell. 2017 ;67(6):936-946.e5.
. Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. Cell Syst. 2017 ;5(3):221-229.e4.
. Rat Prefrontal Cortex Inactivations during Decision Making Are Explained by Bistable Attractor Dynamics. Neural Comput. 2017 ;29(11):2861-2886.
. Spatial gene drives and pushed genetic waves. Proc Natl Acad Sci U S A. 2017 ;114(32):8452-8457.
. Tracing Information Flow from Erk to Target Gene Induction Reveals Mechanisms of Dynamic and Combinatorial Control. Mol Cell. 2017 ;67(5):757-769.e5.
. Discovery and dissection of metabolic oscillations in the microaerobic nitric oxide response network of Escherichia coli. Proc Natl Acad Sci U S A. 2016 ;113(12):E1757-66.
. Error-Robust Modes of the Retinal Population Code. PLoS Comput Biol. 2016 ;12(11):e1005148.
. Flow-dependent myosin recruitment during Drosophila cellularization requires zygotic dunk activity. Development. 2016 ;143(13):2417-30.
. simMSG: an experimental design tool for high-throughput genotyping of hybrids. Mol Ecol Resour. 2016 ;16(1):183-92.
. A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput Biol. 2016 ;12(11):e1005183.
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