Publications
Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. PLoS Genet. 2019 ;15(9):e1008382.
. Analysis of Longitudinal Outcome Data with Missing Values in Total Knee Arthroplasty. J Arthroplasty. 2016 ;31(1):81-6.
. Asymmetry between Activators and Deactivators in Functional Protein Networks. Sci Rep. 2020 ;10(1):10131.
. Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol. 2017 ;13(5):e1005517.
. Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput Biol. 2015 ;11(11):e1004509.
. Biophysical Measurements of Bacterial Cell Shape. Methods Mol Biol. 2016 ;1440:227-45.
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Collective Behavior of Place and Non-place Neurons in the Hippocampal Network. Neuron. 2017 ;96(5):1178-1191.e4.
. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nat Genet. 2018 ;50(8):1171-1179.
. Domain prediction with probabilistic directional context. Bioinformatics. 2017 ;33(16):2471-2478.
. Fast animal pose estimation using deep neural networks. Nat Methods. 2019 ;16(1):117-125.
. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005 ;307(5712):1121-4.
. Functional organization of ganglion cells in the salamander retina. J Neurophysiol. 2006 ;95(4):2277-92.
. Inferring interaction partners from protein sequences. Proc Natl Acad Sci U S A. 2016 ;113(43):12180-12185.
. Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 2015 ;43(3):605-14.
. Interpretation of an individual functional genomics experiment guided by massive public data. Nat Methods. 2018 ;15(12):1049-1052.
. A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis. Genetics. 2019 ;212(4):1009-1029.
. Mapping a complete neural population in the retina. J Neurosci. 2012 ;32(43):14859-73.
. Metabolically efficient information processing. Neural Comput. 2001 ;13(4):799-815.
. Metabolite Spectral Accuracy on Orbitraps. Anal Chem. 2017 ;89(11):5940-5948.
. . Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. Cell Syst. 2017 ;5(3):221-229.e4.
. Paired fruit flies synchronize behavior: Uncovering social interactions in Drosophila melanogaster. PLoS Comput Biol. 2020 ;16(10):e1008230.
. Predictability and hierarchy in Drosophila behavior. Proc Natl Acad Sci U S A. 2016 ;113(42):11943-11948.
. Predicting effects of noncoding variants with deep learning-based sequence model. Nat Methods. 2015 ;12(10):931-4.
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