Publications

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Author Title [ Year(Asc)]
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2019
Cabreros I, Storey JD. A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis. Genetics. 2019 ;212(4):1009-1029.
2018
Lee Y-S, Wong AK, Tadych A, Hartmann BM, Park CY, DeJesus VA, et al. Interpretation of an individual functional genomics experiment guided by massive public data. Nat Methods. 2018 ;15(12):1049-1052.
2017
Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM. Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol. 2017 ;13(5):e1005517.
Su X, Lu W, Rabinowitz JD. Metabolite Spectral Accuracy on Orbitraps. Anal Chem. 2017 ;89(11):5940-5948.
2016
Kang YGwi, Lee JTaek, Kang JYeal, Kim GHye, Kim TKyun. Analysis of Longitudinal Outcome Data with Missing Values in Total Knee Arthroplasty. J Arthroplasty. 2016 ;31(1):81-6.
Hao W, Song M, Storey JD. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics. 2016 ;32(5):713-21.
Rajan K, Harvey CD, Tank DW. Recurrent Network Models of Sequence Generation and Memory. Neuron. 2016 ;90(1):128-42.
2015
Ochoa A, Storey JD, Llinás M, Singh M. Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput Biol. 2015 ;11(11):e1004509.
Gorenshteyn D, Zaslavsky E, Fribourg M, Park CY, Wong AK, Tadych A, et al. Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 2015 ;43(3):605-14.
Zhou J, Troyanskaya OG. Predicting effects of noncoding variants with deep learning-based sequence model. Nat Methods. 2015 ;12(10):931-4.
Chung NChristophe, Storey JD. Statistical significance of variables driving systematic variation in high-dimensional data. Bioinformatics. 2015 ;31(4):545-54.
Yan Z, Bai X, Yan C, Wu J, Li Z, Xie T, et al. Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution. Nature. 2015 ;517(7532):50-55.
Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ, et al.. Thermodynamics and signatures of criticality in a network of neurons. Proc Natl Acad Sci U S A. 2015 ;112(37):11508-13.
2014
McAlister GC, Nusinow DP, Jedrychowski MP, Wühr M, Huttlin EL, Erickson BK, et al.. MultiNotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal Chem. 2014 ;86(14):7150-8.
2012
Marre O, Amodei D, Deshmukh N, Sadeghi K, Soo F, Holy TE, et al. Mapping a complete neural population in the retina. J Neurosci. 2012 ;32(43):14859-73.
2011
Kopec CD, Bowers AC, Pai S, Brody CD. Semi-automated atlas-based analysis of brain histological sections. J Neurosci Methods. 2011 ;196(1):12-9.
2007
Schwartz G, Taylor S, Fisher C, Harris R, Berry MJ. Synchronized firing among retinal ganglion cells signals motion reversal. Neuron. 2007 ;55(6):958-69.
2006
Segev R, Puchalla J, Berry MJ. Functional organization of ganglion cells in the salamander retina. J Neurophysiol. 2006 ;95(4):2277-92.
2005
Machens CK, Romo R, Brody CD. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005 ;307(5712):1121-4.
2004
Segev R, Goodhouse J, Puchalla J, Berry MJ. Recording spikes from a large fraction of the ganglion cells in a retinal patch. Nat Neurosci. 2004 ;7(10):1154-61.
2001
Balasubramanian V, Kimber D, Berry MJ. Metabolically efficient information processing. Neural Comput. 2001 ;13(4):799-815.