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Keenan SE, Avdeeva M, Yang L, Alber DS, Wieschaus EF, Shvartsman SY. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022 ;119(15):e2112892119.
Overman KE, Choi DM, Leung K, Shaevitz JW, Berman GJ. Measuring the repertoire of age-related behavioral changes in Drosophila melanogaster. PLoS Comput Biol. 2022 ;18(2):e1009867.
McEnany J, Meir Y, Wingreen NS. piRNAs of Caenorhabditis elegans broadly silence nonself sequences through functionally random targeting. Nucleic Acids Res. 2022 ;50(3):1416-1429.
Colonnetta MM, Goyal Y, Johnson HE, Syal S, Schedl P, Deshpande G. Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo. PLoS Genet. 2022 ;18(1):e1010002.
Ibragimov AN, Bylino OV, Kyrchanova OV, Shidlovskii YV, White R, Schedl P, et al. The Variable CTCF Site from Drosophila melanogaster Ubx Gene is Redundant and Has no Insulator Activity. Dokl Biochem Biophys. 2022 ;505(1):173-175.
Colonnetta MM, Lym LR, Wilkins L, Kappes G, Castro EA, Ryder PV, et al. Antagonism between and Torso receptor regulates transcriptional quiescence underlying germline/soma distinction. Elife. 2021 ;10.
Colonnetta MM, Abrahante JE, Schedl P, Gohl DM, Deshpande G. CLAMP regulates zygotic genome activation in Drosophila embryos. Genetics. 2021 ;219(2).
Doherty CA, Diegmiller R, Kapasiawala M, Gavis ER, Shvartsman SY. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021 ;56(6):860-870.e8.
Ing-Simmons E, Vaid R, Bing XYang, Levine M, Mannervik M, Vaquerizas JM. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021 ;53(4):487-499.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Mapping of functional elements of the Fab-6 boundary involved in the regulation of the Abd-B hox gene in Drosophila melanogaster. Sci Rep. 2021 ;11(1):4156.
Cofer EM, Raimundo J, Tadych A, Yamazaki Y, Wong AK, Theesfeld CL, et al. Modeling transcriptional regulation of model species with deep learning. Genome Res. 2021 ;31(6):1097-1105.
Marmion RA, Yang L, Goyal Y, Jindal GA, Wetzel JL, Singh M, et al. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Mol Biol Cell. 2021 ;32(9):974-983.
Kan L, Ott S, Joseph B, Park ESil, Dai W, Kleiner RE, et al. A neural mA/Ythdf pathway is required for learning and memory in Drosophila. Nat Commun. 2021 ;12(1):1458.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Redundant enhancers in the iab-5 domain cooperatively activate Abd-B in the A5 and A6 abdominal segments of Drosophila. Development. 2021 ;148(19).
Huang S-K, Whitney PH, Dutta S, Shvartsman SY, Rushlow CA. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021 ;31(22):5102-5110.e5.
Shidlovskii YV, Bylino OV, Shaposhnikov AV, Kachaev ZM, Lebedeva LA, Kolesnik VV, et al. Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in . Int J Mol Sci. 2021 ;22(6).
Falahati H, Hur W, Di Talia S, Wieschaus E. Temperature-Induced uncoupling of cell cycle regulators. Dev Biol. 2021 ;470:147-153.
McFann S, Dutta S, Toettcher JE, Shvartsman SY. Temporal integration of inductive cues on the way to gastrulation. Proc Natl Acad Sci U S A. 2021 ;118(23).
Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman SY, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020 ;31(4):235-243.
Eichler CE, Hakes AC, Hull B, Gavis ER. Compartmentalized degradation in the germ plasm safeguards germline development. Elife. 2020 ;9.
Smits CM, Shvartsman SY. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020 ;137:193-217.
Parkhitko AA, Ramesh D, Wang L, Leshchiner D, Filine E, Binari R, et al. Downregulation of the tyrosine degradation pathway extends lifespan. Elife. 2020 ;9.
Zhang R, Lee DM, Jimah JR, Gerassimov N, Yang C, Kim S, et al. Dynamin regulates the dynamics and mechanical strength of the actin cytoskeleton as a multifilament actin-bundling protein. Nat Cell Biol. 2020 ;22(6):674-688.
Alizzi RA, Xu D, Tenenbaum CM, Wang W, Gavis ER. The ELAV/Hu protein Found in neurons regulates cytoskeletal and ECM adhesion inputs for space-filling dendrite growth. PLoS Genet. 2020 ;16(12):e1009235.
Johnson HE, Djabrayan NJV, Shvartsman SY, Toettcher JE. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020 ;30(17):3414-3424.e3.