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2022
Keenan SE, Avdeeva M, Yang L, Alber DS, Wieschaus EF, Shvartsman SY. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022 ;119(15):e2112892119.
Overman KE, Choi DM, Leung K, Shaevitz JW, Berman GJ. Measuring the repertoire of age-related behavioral changes in Drosophila melanogaster. PLoS Comput Biol. 2022 ;18(2):e1009867.
McEnany J, Meir Y, Wingreen NS. piRNAs of Caenorhabditis elegans broadly silence nonself sequences through functionally random targeting. Nucleic Acids Res. 2022 ;50(3):1416-1429.
Colonnetta MM, Goyal Y, Johnson HE, Syal S, Schedl P, Deshpande G. Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo. PLoS Genet. 2022 ;18(1):e1010002.
2021
Colonnetta MM, Lym LR, Wilkins L, Kappes G, Castro EA, Ryder PV, et al. Antagonism between and Torso receptor regulates transcriptional quiescence underlying germline/soma distinction. Elife. 2021 ;10.
Colonnetta MM, Abrahante JE, Schedl P, Gohl DM, Deshpande G. CLAMP regulates zygotic genome activation in Drosophila embryos. Genetics. 2021 ;219(2).
Doherty CA, Diegmiller R, Kapasiawala M, Gavis ER, Shvartsman SY. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021 ;56(6):860-870.e8.
Ing-Simmons E, Vaid R, Bing XYang, Levine M, Mannervik M, Vaquerizas JM. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021 ;53(4):487-499.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Mapping of functional elements of the Fab-6 boundary involved in the regulation of the Abd-B hox gene in Drosophila melanogaster. Sci Rep. 2021 ;11(1):4156.
Cofer EM, Raimundo J, Tadych A, Yamazaki Y, Wong AK, Theesfeld CL, et al. Modeling transcriptional regulation of model species with deep learning. Genome Res. 2021 ;31(6):1097-1105.
Marmion RA, Yang L, Goyal Y, Jindal GA, Wetzel JL, Singh M, et al. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Mol Biol Cell. 2021 ;32(9):974-983.
Kan L, Ott S, Joseph B, Park ESil, Dai W, Kleiner RE, et al. A neural mA/Ythdf pathway is required for learning and memory in Drosophila. Nat Commun. 2021 ;12(1):1458.
Postika N, Schedl P, Georgiev P, Kyrchanova O. Redundant enhancers in the iab-5 domain cooperatively activate Abd-B in the A5 and A6 abdominal segments of Drosophila. Development. 2021 ;148(19).
Huang S-K, Whitney PH, Dutta S, Shvartsman SY, Rushlow CA. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021 ;31(22):5102-5110.e5.
Shidlovskii YV, Bylino OV, Shaposhnikov AV, Kachaev ZM, Lebedeva LA, Kolesnik VV, et al. Subunits of the PBAP Chromatin Remodeler Are Capable of Mediating Enhancer-Driven Transcription in . Int J Mol Sci. 2021 ;22(6).
Falahati H, Hur W, Di Talia S, Wieschaus E. Temperature-Induced uncoupling of cell cycle regulators. Dev Biol. 2021 ;470:147-153.
McFann S, Dutta S, Toettcher JE, Shvartsman SY. Temporal integration of inductive cues on the way to gastrulation. Proc Natl Acad Sci U S A. 2021 ;118(23).
2020
Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman SY, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020 ;31(4):235-243.
Eichler CE, Hakes AC, Hull B, Gavis ER. Compartmentalized degradation in the germ plasm safeguards germline development. Elife. 2020 ;9.
Smits CM, Shvartsman SY. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020 ;137:193-217.
Parkhitko AA, Ramesh D, Wang L, Leshchiner D, Filine E, Binari R, et al. Downregulation of the tyrosine degradation pathway extends lifespan. Elife. 2020 ;9.
Zhang R, Lee DM, Jimah JR, Gerassimov N, Yang C, Kim S, et al. Dynamin regulates the dynamics and mechanical strength of the actin cytoskeleton as a multifilament actin-bundling protein. Nat Cell Biol. 2020 ;22(6):674-688.
Alizzi RA, Xu D, Tenenbaum CM, Wang W, Gavis ER. The ELAV/Hu protein Found in neurons regulates cytoskeletal and ECM adhesion inputs for space-filling dendrite growth. PLoS Genet. 2020 ;16(12):e1009235.
Johnson HE, Djabrayan NJV, Shvartsman SY, Toettcher JE. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020 ;30(17):3414-3424.e3.
Klibaite U, Shaevitz JW. Paired fruit flies synchronize behavior: Uncovering social interactions in Drosophila melanogaster. PLoS Comput Biol. 2020 ;16(10):e1008230.