Tracing Information Flow from Erk to Target Gene Induction Reveals Mechanisms of Dynamic and Combinatorial Control. Author Maxwell Wilson, Pavithran Ravindran, Wendell Lim, Jared Toettcher Publication Year 2017 Type Journal Article Abstract Cell signaling networks coordinate specific patterns of protein expression in response to external cues, yet the logic by which signaling pathway activity determines the eventual abundance of target proteins is complex and poorly understood. Here, we describe an approach for simultaneously controlling the Ras/Erk pathway and monitoring a target gene's transcription and protein accumulation in single live cells. We apply our approach to dissect how Erk activity is decoded by immediate early genes (IEGs). We find that IEG transcription decodes Erk dynamics through a shared band-pass filtering circuit; repeated Erk pulses transcribe IEGs more efficiently than sustained Erk inputs. However, despite highly similar transcriptional responses, each IEG exhibits dramatically different protein-level accumulation, demonstrating a high degree of post-transcriptional regulation by combinations of multiple pathways. Our results demonstrate that the Ras/Erk pathway is decoded by both dynamic filters and logic gates to shape target gene responses in a context-specific manner. Keywords Animals, Mice, Gene Expression Profiling, Transcription, Genetic, RNA, Messenger, Humans, Signal Transduction, Time Factors, Phosphorylation, Feedback, Physiological, Enzyme Activation, Models, Genetic, Computer Simulation, Light, ras Proteins, HEK293 Cells, Transfection, NIH 3T3 Cells, Optogenetics, Single-Cell Analysis, Fibroblasts, RNA Interference, Transcriptome, Extracellular Signal-Regulated MAP Kinases, Immediate-Early Proteins, Genes, Immediate-Early, Up-Regulation, Platelet-Derived Growth Factor Journal Mol Cell Volume 67 Issue 5 Pages 757-769.e5 Date Published 2017 Sep 07 ISSN Number 1097-4164 DOI 10.1016/j.molcel.2017.07.016 Alternate Journal Mol Cell PMCID PMC5591080 PMID 28826673 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML