Thermal Unthreading of the Lasso Peptides Astexin-2 and Astexin-3. Author Caitlin Allen, Maria Chen, Alexander Trick, Dan Le, Andrew Ferguson, A James Link Publication Year 2016 Type Journal Article Abstract Lasso peptides are a class of knot-like polypeptides in which the C-terminal tail of the peptide threads through a ring formed by an isopeptide bond between the N-terminal amine group and a side chain carboxylic acid. The small size (∼20 amino acids) and simple topology of lasso peptides make them a good model system for studying the unthreading of entangled polypeptides, both with experiments and atomistic simulation. Here, we present an in-depth study of the thermal unthreading behavior of two lasso peptides astexin-2 and astexin-3. Quantitative kinetics and energetics of the unthreading process were determined for variants of these peptides using a series of chromatography and mass spectrometry experiments and biased molecular dynamics (MD) simulations. In addition, we show that the Tyr15Phe variant of astexin-3 unthreads via an unprecedented "tail pulling" mechanism. MD simulations on a model ring-thread system coupled with machine learning approaches also led to the discovery of physicochemical descriptors most important for peptide unthreading. Keywords Kinetics, Peptides, Molecular Dynamics Simulation, Protein Stability Journal ACS Chem Biol Volume 11 Issue 11 Pages 3043-3051 Date Published 2016 Nov 18 ISSN Number 1554-8937 DOI 10.1021/acschembio.6b00588 Alternate Journal ACS Chem Biol PMCID PMC5148663 PMID 27588549 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML