Structural basis for sequence-specific recognition of DNA by TAL effectors. Author Dong Deng, Chuangye Yan, Xiaojing Pan, Magdy Mahfouz, Jiawei Wang, Jian-Kang Zhu, Yigong Shi, Nieng Yan Publication Year 2012 Type Journal Article Abstract TAL (transcription activator-like) effectors, secreted by phytopathogenic bacteria, recognize host DNA sequences through a central domain of tandem repeats. Each repeat comprises 33 to 35 conserved amino acids and targets a specific base pair by using two hypervariable residues [known as repeat variable diresidues (RVDs)] at positions 12 and 13. Here, we report the crystal structures of an 11.5-repeat TAL effector in both DNA-free and DNA-bound states. Each TAL repeat comprises two helices connected by a short RVD-containing loop. The 11.5 repeats form a right-handed, superhelical structure that tracks along the sense strand of DNA duplex, with RVDs contacting the major groove. The 12th residue stabilizes the RVD loop, whereas the 13th residue makes a base-specific contact. Understanding DNA recognition by TAL effectors may facilitate rational design of DNA-binding proteins with biotechnological applications. Keywords Base Sequence, Molecular Sequence Data, Bacterial Proteins, Virulence Factors, Models, Molecular, Protein Structure, Tertiary, Crystallography, X-Ray, DNA, Protein Conformation, Amino Acid Sequence, Protein Structure, Secondary, DNA-Binding Proteins, Hydrogen Bonding, Chemical Phenomena, Repetitive Sequences, Amino Acid, Xanthomonas Journal Science Volume 335 Issue 6069 Pages 720-3 Date Published 2012 Feb 10 ISSN Number 1095-9203 DOI 10.1126/science.1215670 Alternate Journal Science PMCID PMC3586824 PMID 22223738 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML