A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. Author Lihui Feng, Steven Rutherford, Kai Papenfort, John Bagert, Julia van Kessel, David Tirrell, Ned Wingreen, Bonnie Bassler Publication Year 2015 Type Journal Article Abstract Quorum sensing is a cell-cell communication process that bacteria use to transition between individual and social lifestyles. In vibrios, homologous small RNAs called the Qrr sRNAs function at the center of quorum-sensing pathways. The Qrr sRNAs regulate multiple mRNA targets including those encoding the quorum-sensing regulatory components luxR, luxO, luxM, and aphA. We show that a representative Qrr, Qrr3, uses four distinct mechanisms to control its particular targets: the Qrr3 sRNA represses luxR through catalytic degradation, represses luxM through coupled degradation, represses luxO through sequestration, and activates aphA by revealing the ribosome binding site while the sRNA itself is degraded. Qrr3 forms different base-pairing interactions with each mRNA target, and the particular pairing strategy determines which regulatory mechanism occurs. Combined mathematical modeling and experiments show that the specific Qrr regulatory mechanism employed governs the potency, dynamics, and competition of target mRNA regulation, which in turn, defines the overall quorum-sensing response. Keywords Quorum Sensing, Vibrio, Escherichia coli, Base Sequence, Molecular Sequence Data, Inverted Repeat Sequences, Nucleic Acid Conformation, RNA, Bacterial, RNA, Messenger, RNA, Small Untranslated Journal Cell Volume 160 Issue 1-2 Pages 228-40 Date Published 2015 Jan 15 ISSN Number 1097-4172 DOI 10.1016/j.cell.2014.11.051 Alternate Journal Cell PMCID PMC4313533 PMID 25579683 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML