1.Cappuccio A, Chawla D, Chen X, Rubenstein A, Cheng W, Mao W, Burke T, Tsalik E, Petzold E, Henao R, McClain M, Woods C, Chikina M, Troyanskaya O, Sealfon S, Kleinstein S, Zaslavsky E. Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature. Cell Syst. 2022;13(12):989–1001.e8. PMID: 36549275 Reference Link
1.Ackerman C, Myhrvold C, Thakku S, Freije C, Metsky H, Yang D, Ye S, Boehm C, Kosoko-Thoroddsen T-S, Kehe J, Nguyen T, Carter A, Kulesa A, Barnes J, Dugan V, Hung D, Blainey P, Sabeti P. Massively multiplexed nucleic acid detection with Cas13. Nature. 2020;582(7811):277–282. PMCID: PMC7332423 Reference Link
1.Kennedy M, Hofstadter W, Cristea I. TRANSPIRE: A Computational Pipeline to Elucidate Intracellular Protein Movements from Spatial Proteomics Data Sets. J Am Soc Mass Spectrom. 2020;31(7):1422–1439. PMCID: PMC7737664 Reference Link
1.Saad-Roy C, Wingreen N, Levin S, Grenfell B. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proc Natl Acad Sci U S A. 2020;117(21):11541–11550. PMCID: PMC7261016 Reference Link
1.Cook K, Moreno J, Beltran P, Cristea I. Peroxisome Plasticity at the Virus-Host Interface. Trends Microbiol. 2019;27(11):906–914. PMCID: PMC6857447 Reference Link
1.Murray L, Combs A, Rekapalli P, Cristea I. Methods for characterizing protein acetylation during viral infection. Methods Enzymol. 2019;626:587–620. PMCID: PMC6889803 Reference Link
1.Mesev E, LeDesma R, Ploss A. Decoding type I and III interferon signalling during viral infection. Nat Microbiol. 2019;4(6):914–924. PMCID: PMC6554024 Reference Link
1.Cook K, Cristea I. Location is everything: protein translocations as a viral infection strategy. Curr Opin Chem Biol. 2019;48:34–43. PMCID: PMC6382524 Reference Link
1.Douam F, Ploss A. The use of humanized mice for studies of viral pathogenesis and immunity. Curr Opin Virol. 2018;29:62–71. PMCID: PMC5940492 Reference Link
1.Beltran P, Cook K, Cristea I. Exploring and Exploiting Proteome Organization during Viral Infection. J Virol. 2017;91(18). PMCID: PMC5571249 Reference Link
1.Budayeva H, Rowland E, Cristea I. Intricate Roles of Mammalian Sirtuins in Defense against Viral Pathogens. J Virol. 2016;90(1):5–8. PMCID: PMC4702534 Reference Link
1.Ploss A, Walker C. Editorial overview: Progress and challenges in modeling human viral diseases in vivo. Curr Opin Virol. 2015;13:v-vii. PMCID: PMC6040652 Reference Link
1.Lum K, Cristea I. Proteomic approaches to uncovering virus-host protein interactions during the progression of viral infection. Expert Rev Proteomics. 2016;13(3):325–40. PMCID: PMC4919574 Reference Link
1.Gorenshteyn D, Zaslavsky E, Fribourg M, Park C, Wong A, Tadych A, Hartmann B, Albrecht R, García-Sastre A, Kleinstein S, Troyanskaya O, Sealfon S. Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases. Immunity. 2015;43(3):605–14. PMCID: PMC4753773 Reference Link
