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SARS-CoV-2

  • 1.
    Cappuccio A, Chawla D, Chen X, Rubenstein A, Cheng W, Mao W, Burke T, Tsalik E, Petzold E, Henao R, McClain M, Woods C, Chikina M, Troyanskaya O, Sealfon S, Kleinstein S, Zaslavsky E. Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature. Cell Syst. 2022;13(12):989–1001.e8. PMID: 36549275
    Reference Link
  • 1.
    Sauerwald N, Zhang Z, Ramos I, Nair V, Soares-Schanoski A, Ge Y, Mao W, Alshammary H, Gonzalez-Reiche A, van de Guchte A, Goforth C, Lizewski R, Lizewski S, Amper M, Vasoya M, Seenarine N, Guevara K, Marjanovic N, Miller C, Nudelman G, Schilling M, Sealfon R, Termini M, Vangeti S, Weir D, Zaslavsky E, Chikina M, Wu Y, van Bakel H, Letizia A, Sealfon S, Troyanskaya O. Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection. Cell Syst. 2022;13(11):924–931.e4. PMCID: PMC9623453
    Reference Link
  • 1.
    Suzuki S, Geri J, Knutson S, Bell-Temin H, Tamura T, Fernández D, Lovett G, Till N, Heller B, Guo J, MacMillan D, Ploss A. Photochemical Identification of Auxiliary Severe Acute Respiratory Syndrome Coronavirus 2 Host Entry Factors Using μMap. J Am Chem Soc. 2022;144(36):16604–16611. PMCID: PMC9469761
    Reference Link
  • 1.
    Lizewski R, Sealfon R, Park S, Smith G, Porter C, Gonzalez-Reiche A, Ge Y, Miller C, Goforth C, Pincas H, Termini M, Ramos I, Nair V, Lizewski S, Alshammary H, Cer R, Chen H, George M-C, Arnold C, Glang L, Long K, Malagon F, Marayag J, Nunez E, Rice G, Ana E, Schilling M, Smith D, Sugiharto V, Sun P, van de Guchte A, Khan Z, Dutta J, Vangeti S, Voegtly L, Weir D, Metcalf J, Troyanskaya O, Bishop-Lilly K, Grenfell B, van Bakel H, Letizia A, Sealfon S. SARS-CoV-2 Outbreak Dynamics in an Isolated US Military Recruit Training Center With Rigorous Prevention Measures. Epidemiology. 2022;33(6):797–807. PMCID: PMC9531985
    Reference Link
  • 1.
    Roden C, Dai Y, Giannetti C, Seim I, Lee M, Sealfon R, McLaughlin G, Boerneke M, Iserman C, Wey S, Ekena J, Troyanskaya O, Weeks K, You L, Chilkoti A, Gladfelter A. Double-stranded RNA drives SARS-CoV-2 nucleocapsid protein to undergo phase separation at specific temperatures. Nucleic Acids Res. 2022;50(14):8168–8192. PMCID: PMC9371935
    Reference Link
  • 1.
    Arizti-Sanz J, Bradley A, Zhang Y, Boehm C, Freije C, Grunberg M, Kosoko-Thoroddsen T-S, Welch N, Pillai P, Mantena S, Kim G, Uwanibe J, John O, Eromon P, Kocher G, Gross R, Lee J, Hensley L, MacInnis B, Johnson J, Springer M, Happi C, Sabeti P, Myhrvold C. Simplified Cas13-based assays for the fast identification of SARS-CoV-2 and its variants. Nat Biomed Eng. 2022;6(8):932–943. PMCID: PMC9398993
    Reference Link
  • 1.
    Soares-Schanoski A, Sauerwald N, Goforth C, Periasamy S, Weir D, Lizewski S, Lizewski R, Ge Y, Kuzmina N, Nair V, Vangeti S, Marjanovic N, Cappuccio A, Cheng W, Mofsowitz S, Miller C, Yu X, George M-C, Zaslavsky E, Bukreyev A, Troyanskaya O, Sealfon S, Letizia A, Ramos I. Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19. Front Immunol. 2022;13:821730. PMCID: PMC9037090
    Reference Link
  • 1.
    Kenney D, O’Connell A, Turcinovic J, Montanaro P, Hekman R, Tamura T, Berneshawi A, Cafiero T, Abdullatif S, Blum B, Goldstein S, Heller B, Gertje H, Bullitt E, Trachtenberg A, Chavez E, Nono E, Morrison C, Tseng A, Sheikh A, Kurnick S, Grosz K, Bosmann M, Ericsson M, Huber B, Saeed M, Balazs A, Francis K, Klose A, Paragas N, Campbell J, Connor J, Emili A, Crossland N, Ploss A, Douam F. Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection. Cell Rep. 2022;39(3):110714. PMCID: PMC8977517
    Reference Link
  • 1.
    Welch N, Zhu M, Hua C, Weller J, Mirhashemi M, Nguyen T, Mantena S, Bauer M, Shaw B, Ackerman C, Thakku S, Tse M, Kehe J, Uwera M-M, Eversley J, Bielwaski D, McGrath G, Braidt J, Johnson J, Cerrato F, Moreno G, Krasilnikova L, Petros B, Gionet G, King E, Huard R, Jalbert S, Cleary M, Fitzgerald N, Gabriel S, Gallagher G, Smole S, Madoff L, Brown C, Keller M, Wilson M, Kirby M, Barnes J, Park D, Siddle K, Happi C, Hung D, Springer M, MacInnis B, Lemieux J, Rosenberg E, Branda J, Blainey P, Sabeti P, Myhrvold C. Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. Nat Med. 2022;28(5):1083–1094. PMCID: PMC9117129
    Reference Link
  • 1.
    King S, Singh M. Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections. PLoS Comput Biol. 2021;17(11):e1009560. PMCID: PMC8601562
    Reference Link
  • 1.
    Meyer M, Wang Y, Edwards D, Smith G, Rubenstein A, Ramanathan P, Mire C, Pietzsch C, Chen X, Ge Y, Cheng W, Henry C, Woods A, Ma L, Stewart-Jones G, Bock K, Minai M, Nagata B, Periasamy S, Shi P-Y, Graham B, Moore I, Ramos I, Troyanskaya O, Zaslavsky E, Carfi A, Sealfon S, Bukreyev A. Attenuated activation of pulmonary immune cells in mRNA-1273-vaccinated hamsters after SARS-CoV-2 infection. J Clin Invest. 2021;131(20). PMCID: PMC8516449
    Reference Link
  • 1.
    Sanders D, Jumper C, Ackerman P, Bracha D, Donlic A, Kim H, Kenney D, Castello-Serrano I, Suzuki S, Tamura T, Tavares A, Saeed M, Holehouse A, Ploss A, Levental I, Douam F, Padera R, Levy B, Brangwynne C. SARS-CoV-2 requires cholesterol for viral entry and pathological syncytia formation. Elife. 2021;10. PMCID: PMC8104966
    Reference Link
  • 1.
    Iserman C, Roden C, Boerneke M, Sealfon R, McLaughlin G, Jungreis I, Fritch E, Hou Y, Ekena J, Weidmann C, Theesfeld C, Kellis M, Troyanskaya O, Baric R, Sheahan T, Weeks K, Gladfelter A. Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid. Mol Cell. 2020;80(6):1078–1091.e6. PMCID: PMC7691212
    Reference Link
  • 1.
    Letizia A, Ramos I, Obla A, Goforth C, Weir D, Ge Y, Bamman M, Dutta J, Ellis E, Estrella L, George M-C, Gonzalez-Reiche A, Graham W, van de Guchte A, Gutierrez R, Jones F, Kalomoiri A, Lizewski R, Lizewski S, Marayag J, Marjanovic N, Millar E, Nair V, Nudelman G, Nunez E, Pike B, Porter C, Regeimbal J, Rirak S, Ana E, Sealfon R, Sebra R, Simons M, Soares-Schanoski A, Sugiharto V, Termini M, Vangeti S, Williams C, Troyanskaya O, van Bakel H, Sealfon S. SARS-CoV-2 Transmission among Marine Recruits during Quarantine. N Engl J Med. 2020;383(25):2407–2416. PMCID: PMC7675690
    Reference Link
  • 1.
    Menon R, Otto E, Sealfon R, Nair V, Wong A, Theesfeld C, Chen X, Wang Y, Boppana A, Luo J, Yang Y, Kasson P, Schaub J, Berthier C, Eddy S, Lienczewski C, Godfrey B, Dagenais S, Sohaney R, Hartman J, Fermin D, Subramanian L, Looker H, Harder J, Mariani L, Hodgin J, Sexton J, Wobus C, Naik A, Nelson R, Troyanskaya O, Kretzler M. SARS-CoV-2 receptor networks in diabetic and COVID-19-associated kidney disease. Kidney Int. 2020;98(6):1502–1518. PMCID: PMC7543950
    Reference Link
  • 1.
    Abkarian M, Mendez S, Xue N, Yang F, Stone H. Speech can produce jet-like transport relevant to asymptomatic spreading of virus. Proc Natl Acad Sci U S A. 2020;117(41):25237–25245. PMCID: PMC7568291
    Reference Link
  • 1.
    Ackerman C, Myhrvold C, Thakku S, Freije C, Metsky H, Yang D, Ye S, Boehm C, Kosoko-Thoroddsen T-S, Kehe J, Nguyen T, Carter A, Kulesa A, Barnes J, Dugan V, Hung D, Blainey P, Sabeti P. Massively multiplexed nucleic acid detection with Cas13. Nature. 2020;582(7811):277–282. PMCID: PMC7332423
    Reference Link
  • 1.
    DiMaio D, Enquist L, Dermody T. A New Coronavirus Emerges, This Time Causing a Pandemic. Annu Rev Virol. 2020;7(1):iii-v. PMID: 32315256
    Reference Link

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