1.Seyboldt R, Lavoie J, Henry A, Vanaret J, Petkova M, Gregor T, François P. Latent space of a small genetic network: Geometry of dynamics and information. Proc Natl Acad Sci U S A. 2022;119(26):e2113651119. PMCID: PMC9245618 Reference Link
1.Metsky H, Welch N, Pillai P, Haradhvala N, Rumker L, Mantena S, Zhang Y, Yang D, Ackerman C, Weller J, Blainey P, Myhrvold C, Mitzenmacher M, Sabeti P. Designing sensitive viral diagnostics with machine learning. Nat Biotechnol. 2022;40(7):1123–1131. PMCID: PMC9287178 Reference Link
1.Sohrabi S, Mor D, Kaletsky R, Keyes W, Murphy C. High-throughput behavioral screen in C. elegans reveals Parkinson’s disease drug candidates. Commun Biol. 2021;4(1):203. PMCID: PMC7884385 Reference Link
1.Li V, Zhang Z, Troyanskaya O. CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes. Bioinformatics. 2021;37(Suppl_1):i342-i348. PMCID: PMC8275342 Reference Link
1.Chen K, Cofer E, Zhou J, Troyanskaya O. Selene: a PyTorch-based deep learning library for sequence data. Nat Methods. 2019;16(4):315–318. PMCID: PMC7148117 Reference Link
1.Pereira T, Aldarondo D, Willmore L, Kislin M, Wang S, Murthy M, Shaevitz J. Fast animal pose estimation using deep neural networks. Nat Methods. 2019;16(1):117–125. PMCID: PMC6899221 Reference Link
1.Yao V, Wong A, Troyanskaya O. Enabling Precision Medicine through Integrative Network Models. J Mol Biol. 2018;430(18 Pt A):2913–2923. PMID: 30003887 Reference Link
1.Piet A, Erlich J, Kopec C, Brody C. Rat Prefrontal Cortex Inactivations during Decision Making Are Explained by Bistable Attractor Dynamics. Neural Comput. 2017;29(11):2861–2886. PMCID: PMC6535097 Reference Link
1.Machens C, Romo R, Brody C. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005;307(5712):1121–4. PMID: 15718474 Reference Link
1.Markowitz D, Collman F, Brody C, Hopfield J, Tank D. Rate-specific synchrony: using noisy oscillations to detect equally active neurons. Proc Natl Acad Sci U S A. 2008;105(24):8422–7. PMCID: PMC2448852 Reference Link
1.Jun J, Miller P, Hernández A, Zainos A, Lemus L, Brody C, Romo R. Heterogenous population coding of a short-term memory and decision task. J Neurosci. 2010;30(3):916–29. PMCID: PMC2941889 Reference Link