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Neural Networks, Computer

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    Seyboldt R, Lavoie J, Henry A, Vanaret J, Petkova M, Gregor T, François P. Latent space of a small genetic network: Geometry of dynamics and information. Proc Natl Acad Sci U S A. 2022;119(26):e2113651119. PMCID: PMC9245618
    Reference Link
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    Metsky H, Welch N, Pillai P, Haradhvala N, Rumker L, Mantena S, Zhang Y, Yang D, Ackerman C, Weller J, Blainey P, Myhrvold C, Mitzenmacher M, Sabeti P. Designing sensitive viral diagnostics with machine learning. Nat Biotechnol. 2022;40(7):1123–1131. PMCID: PMC9287178
    Reference Link
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    Sohrabi S, Mor D, Kaletsky R, Keyes W, Murphy C. High-throughput behavioral screen in C. elegans reveals Parkinson’s disease drug candidates. Commun Biol. 2021;4(1):203. PMCID: PMC7884385
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    Li V, Zhang Z, Troyanskaya O. CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes. Bioinformatics. 2021;37(Suppl_1):i342-i348. PMCID: PMC8275342
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    Chen K, Cofer E, Zhou J, Troyanskaya O. Selene: a PyTorch-based deep learning library for sequence data. Nat Methods. 2019;16(4):315–318. PMCID: PMC7148117
    Reference Link
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    Pereira T, Aldarondo D, Willmore L, Kislin M, Wang S, Murthy M, Shaevitz J. Fast animal pose estimation using deep neural networks. Nat Methods. 2019;16(1):117–125. PMCID: PMC6899221
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    Yao V, Wong A, Troyanskaya O. Enabling Precision Medicine through Integrative Network Models. J Mol Biol. 2018;430(18 Pt A):2913–2923. PMID: 30003887
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    Piet A, Erlich J, Kopec C, Brody C. Rat Prefrontal Cortex Inactivations during Decision Making Are Explained by Bistable Attractor Dynamics. Neural Comput. 2017;29(11):2861–2886. PMCID: PMC6535097
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    Machens C, Romo R, Brody C. Flexible control of mutual inhibition: a neural model of two-interval discrimination. Science. 2005;307(5712):1121–4. PMID: 15718474
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    Markowitz D, Collman F, Brody C, Hopfield J, Tank D. Rate-specific synchrony: using noisy oscillations to detect equally active neurons. Proc Natl Acad Sci U S A. 2008;105(24):8422–7. PMCID: PMC2448852
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    Jun J, Miller P, Hernández A, Zainos A, Lemus L, Brody C, Romo R. Heterogenous population coding of a short-term memory and decision task. J Neurosci. 2010;30(3):916–29. PMCID: PMC2941889
    Reference Link

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