Dang S, Sun L, Huang Y, Lu F, Liu Y, Gong H, Wang J, Yan N. Structure of a fucose transporter in an outward-open conformation. Nature. 2010;467(7316):734–8. PMID: 20877283

Lu F, Li S, Jiang Y, Jiang J, Fan H, Lu G, Deng D, Dang S, Zhang X, Wang J, Yan N. Structure and mechanism of the uracil transporter UraA. Nature. 2011;472(7342):243–6. PMID: 21423164

Deng D, Xu C, Sun P, Wu J, Yan C, Hu M, Yan N. Crystal structure of the human glucose transporter GLUT1. Nature. 2014;510(7503):121–5. PMID: 24847886

Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis I, Singer A, Shvartsman S. Synthesizing developmental trajectories. PLoS Comput Biol. 2017;13(9):e1005742. PMCID: PMC5619836

Nofal M, Zhang K, Han S, Rabinowitz J. mTOR Inhibition Restores Amino Acid Balance in Cells Dependent on Catabolism of Extracellular Protein. Mol Cell. 2017;67(6):936–946.e5. PMCID: PMC5612669

Nelson C, Gleghorn J, Pang M-F, Jaslove J, Goodwin K, Varner V, Miller E, Radisky D, Stone H. Microfluidic chest cavities reveal that transmural pressure controls the rate of lung development. Development. 2017;144(23):4328–4335. PMCID: PMC5769635

Mattingly H, Sheintuch M, Shvartsman S. The Design Space of the Embryonic Cell Cycle Oscillator. Biophys J. 2017;113(3):743–752. PMCID: PMC5550316

Piotrowski-Daspit A, Nerger B, Wolf A, Sundaresan S, Nelson C. Dynamics of Tissue-Induced Alignment of Fibrous Extracellular Matrix. Biophys J. 2017;113(3):702–713. PMCID: PMC5550306

Beroz F, Jawerth L, Münster S, Weitz D, Broedersz C, Wingreen N. Physical limits to biomechanical sensing in disordered fibre networks. Nat Commun. 2017;8:16096. PMCID: PMC5520107

McCabe A, Ricci D, Adetunji M, Silhavy T. Conformational Changes That Coordinate the Activity of BamA and BamD Allowing β-Barrel Assembly. J Bacteriol. 2017;199(20). PMCID: PMC5637172

Soltes G, Martin N, Park E, Sutterlin H, Silhavy T. Distinctive Roles for Periplasmic Proteases in the Maintenance of Essential Outer Membrane Protein Assembly. J Bacteriol. 2017;199(20). PMCID: PMC5637175

Campàs O, Mallarino R, Herrel A, Abzhanov A, Brenner M. Scaling and shear transformations capture beak shape variation in Darwin’s finches. Proc Natl Acad Sci U S A. 2010;107(8):3356–60. PMCID: PMC2840476

Mallarino R, Abzhanov A. Paths less traveled: evo-devo approaches to investigating animal morphological evolution. Annu Rev Cell Dev Biol. 2012;28:743–63. PMCID: PMC8845070

Osterfield M, Berg C, Shvartsman S. Epithelial Patterning, Morphogenesis, and Evolution: Drosophila Eggshell as a Model. Dev Cell. 2017;41(4):337–348. PMCID: PMC5443119

Siedlik M, Manivannan S, Kevrekidis I, Nelson C. Cell Division Induces and Switches Coherent Angular Motion within Bounded Cellular Collectives. Biophys J. 2017;112(11):2419–2427. PMCID: PMC5474845

Sabass B, Koch M, Liu G, Stone H, Shaevitz J. Force generation by groups of migrating bacteria. Proc Natl Acad Sci U S A. 2017;114(28):7266–7271. PMCID: PMC5514709

Taillefumier T, Posfai A, Meir Y, Wingreen N. Microbial consortia at steady supply. Elife. 2017;6. PMCID: PMC5419753

Misra M, Audoly B, Shvartsman S. Complex structures from patterned cell sheets. Philos Trans R Soc Lond B Biol Sci. 2017;372(1720). PMCID: PMC5379023

Grant M, Patterson V, Grimes D, Burdine R. Modeling Syndromic Congenital Heart Defects in Zebrafish. Curr Top Dev Biol. 2017;124:1–40. PMID: 28335857

Gregor T. Beyond D’Arcy Thompson: Future challenges for quantitative biology. Mech Dev. 2017;145:10–12. PMCID: PMC5771656

Robinson J, Jaslove J, Murawski A, Fazen C, Brynildsen M. An integrated network analysis reveals that nitric oxide reductase prevents metabolic cycling of nitric oxide by Pseudomonas aeruginosa. Metab Eng. 2017;41:67–81. PMID: 28363762

Celià-Terrassa T, Kang Y. Mouse genomic screen reveals novel host regulator of metastasis. Genome Biol. 2017;18(1):31. PMCID: PMC5314612

Rubinstein B, Mattingly H, Berezhkovskii A, Shvartsman S. Long-term dynamics of multisite phosphorylation. Mol Biol Cell. 2016;27(14):2331–40. PMCID: PMC4945148

Berezhkovskii A, Shvartsman S. Diffusive flux in a model of stochastically gated oxygen transport in insect respiration. J Chem Phys. 2016;144(20):204101. PMCID: PMC4884186

Misra M, Audoly B, Kevrekidis I, Shvartsman S. Shape Transformations of Epithelial Shells. Biophys J. 2016;110(7):1670–1678. PMCID: PMC4833838

Lembong J, Sabass B, Sun B, Rogers M, Stone H. Mechanics regulates ATP-stimulated collective calcium response in fibroblast cells. J R Soc Interface. 2015;12(108):20150140. PMCID: PMC4528580

Okuda S, Sherman D, Silhavy T, Ruiz N, Kahne D. Lipopolysaccharide transport and assembly at the outer membrane: the PEZ model. Nat Rev Microbiol. 2016;14(6):337–45. PMCID: PMC4937791

Konovalova A, Silhavy T. Outer membrane lipoprotein biogenesis: Lol is not the end. Philos Trans R Soc Lond B Biol Sci. 2015;370(1679). PMCID: PMC4632606

Doubrovinski K, Swan M, Polyakov O, Wieschaus E. Measurement of cortical elasticity in Drosophila melanogaster embryos using ferrofluids. Proc Natl Acad Sci U S A. 2017;114(5):1051–1056. PMCID: PMC5293093

Budayeva H, Rowland E, Cristea I. Intricate Roles of Mammalian Sirtuins in Defense against Viral Pathogens. J Virol. 2016;90(1):5–8. PMCID: PMC4702534

Posfai A, Taillefumier T, Wingreen N. Metabolic Trade-Offs Promote Diversity in a Model Ecosystem. Phys Rev Lett. 2017;118(2):028103. PMCID: PMC5743855

Chen D, Aw W, Devenport D, Torquato S. Structural Characterization and Statistical-Mechanical Model of Epidermal Patterns. Biophys J. 2016;111(11):2534–2545. PMCID: PMC5153564

Nerger B, Siedlik M, Nelson C. Microfabricated tissues for investigating traction forces involved in cell migration and tissue morphogenesis. Cell Mol Life Sci. 2017;74(10):1819–1834. PMCID: PMC5391279

Brangwynne C, Marko J. Cell division: A sticky problem for chromosomes. Nature. 2016;535(7611):234–5. PMID: 27362225

Varner V, Nelson C. Computational models of airway branching morphogenesis. Semin Cell Dev Biol. 2017;67:170–176. PMCID: PMC5136345

Gjorevski N, Piotrowski A, Varner V, Nelson C. Dynamic tensile forces drive collective cell migration through three-dimensional extracellular matrices. Sci Rep. 2015;5:11458. PMCID: PMC4499882

Ouzounov N, Nguyen J, Bratton B, Jacobowitz D, Gitai Z, Shaevitz J. MreB Orientation Correlates with Cell Diameter in Escherichia coli. Biophys J. 2016;111(5):1035–43. PMCID: PMC5018124

Devenport D. Tissue morphodynamics: Translating planar polarity cues into polarized cell behaviors. Semin Cell Dev Biol. 2016;55:99–110. PMCID: PMC5005802

Murisic N, Hakim V, Kevrekidis I, Shvartsman S, Audoly B. From discrete to continuum models of three-dimensional deformations in epithelial sheets. Biophys J. 2015;109(1):154–63. PMCID: PMC4571022

Pastino A, Greco T, Mathias R, Cristea I, Schwarzbauer J. Stimulatory effects of advanced glycation endproducts (AGEs) on fibronectin matrix assembly. Matrix Biol. 2017;59:39–53. PMCID: PMC5237628

Aw W, Devenport D. Planar cell polarity: global inputs establishing cellular asymmetry. Curr Opin Cell Biol. 2017;44:110–116. PMCID: PMC5326696

Berezhkovskii A, Shvartsman S. Dynamics of gradient formation by intracellular shuttling. J Chem Phys. 2015;143(7):074116. PMCID: PMC5562396

Mattingly H, Chen J, Arur S, Shvartsman S. A Transport Model for Estimating the Time Course of ERK Activation in the C. elegans Germline. Biophys J. 2015;109(11):2436–45. PMCID: PMC4675862

Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz J. Directional reversals enable Myxococcus xanthus cells to produce collective one-dimensional streams during fruiting-body formation. J R Soc Interface. 2015;12(109):20150049. PMCID: PMC4535398

Seyedsayamdost M, Case R, Kolter R, Clardy J. The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis. Nat Chem. 2011;3(4):331–5. PMCID: PMC3376411

Navis A, Nelson C. Pulling together: Tissue-generated forces that drive lumen morphogenesis. Semin Cell Dev Biol. 2016;55:139–47. PMCID: PMC4903947

Noorbakhsh J, Schwab D, Sgro A, Gregor T, Mehta P. Modeling oscillations and spiral waves in Dictyostelium populations. Phys Rev E Stat Nonlin Soft Matter Phys. 2015;91(6):062711. PMCID: PMC5142844

Robinson J, Brynildsen M. Discovery and dissection of metabolic oscillations in the microaerobic nitric oxide response network of Escherichia coli. Proc Natl Acad Sci U S A. 2016;113(12):E1757–66. PMCID: PMC4812703

Feric M, Broedersz C, Brangwynne C. Soft viscoelastic properties of nuclear actin age oocytes due to gravitational creep. Sci Rep. 2015;5:16607. PMCID: PMC4649616

Devenport D. The cell biology of planar cell polarity. J Cell Biol. 2014;207(2):171–9. PMCID: PMC4210441