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Light

  • 1.
    Kikuchi Y, Sugano E, Yuki S, Tabata K, Endo Y, Takita Y, Onoguchi R, Ozaki T, Fukuda T, Takai Y, Kurose T, Tanaka K, Honma Y, Pérez E, Stock M, Fernández J, Tamura M, Voronkov M, Stock J, Tomita H. SIG-1451, a Novel, Non-Steroidal Anti-Inflammatory Compound, Attenuates Light-Induced Photoreceptor Degeneration by Affecting the Inflammatory Process. Int J Mol Sci. 2022;23(15). PMCID: PMC9369167
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  • 1.
    Buksh B, Knutson S, Oakley J, Bissonnette N, Oblinsky D, Schwoerer M, Seath C, Geri J, Rodriguez-Rivera F, Parker D, Scholes G, Ploss A, MacMillan D. μMap-Red: Proximity Labeling by Red Light Photocatalysis. J Am Chem Soc. 2022;144(14):6154–6162. PMCID: PMC9843638
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  • 1.
    Hoffman S, Tang A, Avalos J. Optogenetics Illuminates Applications in Microbial Engineering. Annu Rev Chem Biomol Eng. 2022;13:373–403. PMID: 35320696
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  • 1.
    Dine E, Reed E, Toettcher J. Positive feedback between the T cell kinase Zap70 and its substrate LAT acts as a clustering-dependent signaling switch. Cell Rep. 2021;35(12):109280. PMCID: PMC8292983
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  • 1.
    Zhao E, Lalwani M, Chen J-M, Orillac P, Toettcher J, Avalos J. Optogenetic Amplification Circuits for Light-Induced Metabolic Control. ACS Synth Biol. 2021;10(5):1143–1154. PMCID: PMC8721662
    Reference Link
  • 1.
    Farahani P, Reed E, Underhill E, Aoki K, Toettcher J. Signaling, Deconstructed: Using Optogenetics to Dissect and Direct Information Flow in Biological Systems. Annu Rev Biomed Eng. 2021;23:61–87. PMID: 33722063
    Reference Link
  • 1.
    Lovelett R, Zhao E, Lalwani M, Toettcher J, Kevrekidis I, Avalos J. Dynamical Modeling of Optogenetic Circuits in Yeast for Metabolic Engineering Applications. ACS Synth Biol. 2021;10(2):219–227. PMID: 33492138
    Reference Link
  • 1.
    Zhao E, Lalwani M, Lovelett R, García-Echauri S, Hoffman S, Gonzalez C, Toettcher J, Kevrekidis I, Avalos J. Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering. ACS Synth Biol. 2020;9(12):3254–3266. PMID: 33232598
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  • 1.
    Lalwani M, Ip S, Carrasco-López C, Day C, Zhao E, Kawabe H, Avalos J. Optogenetic control of the lac operon for bacterial chemical and protein production. Nat Chem Biol. 2021;17(1):71–79. PMCID: 5876151
    Reference Link
  • 1.
    Carrasco-López C, Zhao E, Gil A, Alam N, Toettcher J, Avalos J. Development of light-responsive protein binding in the monobody non-immunoglobulin scaffold. Nat Commun. 2020;11(1):4045. PMCID: PMC7427095
    Reference Link
  • 1.
    Johnson H, Djabrayan N, Shvartsman S, Toettcher J. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020;30(17):3414–3424.e3. PMCID: PMC7730203
    Reference Link
  • 1.
    Zhao J, Chalarca C, Nunes J, Stone H, Emrick T. Self-Propelled Supracolloidal Fibers from Multifunctional Polymer Surfactants and Droplets. Macromol Rapid Commun. 2020;41(15):e2000334. PMID: 32671939
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  • 1.
    Amin J, Petry S, Yang H, Shaevitz J. Uniform intensity in multifocal microscopy using a spatial light modulator. PLoS One. 2020;15(3):e0230217. PMCID: PMC7065765
    Reference Link
  • 1.
    Zhao E, Suek N, Wilson M, Dine E, Pannucci N, Gitai Z, Avalos J, Toettcher J. Light-based control of metabolic flux through assembly of synthetic organelles. Nat Chem Biol. 2019;15(6):589–597. PMCID: PMC6755918
    Reference Link
  • 1.
    Johnson H, Toettcher J. Illuminating developmental biology with cellular optogenetics. Curr Opin Biotechnol. 2018;52:42–48. PMCID: PMC6082700
    Reference Link
  • 1.
    Zhao E, Zhang Y, Mehl J, Park H, Lalwani M, Toettcher J, Avalos J. Optogenetic regulation of engineered cellular metabolism for microbial chemical production. Nature. 2018;555(7698):683–687. PMCID: PMC5876151
    Reference Link
  • 1.
    Wilson M, Ravindran P, Lim W, Toettcher J. Tracing Information Flow from Erk to Target Gene Induction Reveals Mechanisms of Dynamic and Combinatorial Control. Mol Cell. 2017;67(5):757–769.e5. PMCID: PMC5591080
    Reference Link
  • 1.
    Koch M, Shaevitz J. Introduction to Optical Tweezers. Methods Mol Biol. 2017;1486:3–24. PMID: 27844423
    Reference Link
  • 1.
    Johnson H, Goyal Y, Pannucci N, Schüpbach T, Shvartsman S, Toettcher J. The Spatiotemporal Limits of Developmental Erk Signaling. Dev Cell. 2017;40(2):185–192. PMCID: PMC5289754
    Reference Link
  • 1.
    Shin Y, Berry J, Pannucci N, Haataja M, Toettcher J, Brangwynne C. Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets. Cell. 2017;168(1-2):159–171.e14. PMCID: PMC5562165
    Reference Link
  • 1.
    Armbruster U, Carrillo R, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry J, Kramer D, Jonikas M. Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. 2014;5:5439. PMCID: PMC4243252
    Reference Link
  • 1.
    Toettcher J, Gong D, Lim W, Weiner O. Light control of plasma membrane recruitment using the Phy-PIF system. Methods Enzymol. 2011;497:409–23. PMCID: PMC3121701
    Reference Link
  • 1.
    Toettcher J, Voigt C, Weiner O, Lim W. The promise of optogenetics in cell biology: interrogating molecular circuits in space and time. Nat Methods. 2011;8(1):35–8. PMCID: PMC3024327
    Reference Link
  • 1.
    Toettcher J, Gong D, Lim W, Weiner O. Light-based feedback for controlling intracellular signaling dynamics. Nat Methods. 2011;8(10):837–9. PMCID: PMC3184382
    Reference Link
  • 1.
    Berry M, Brivanlou I, Jordan T, Meister M. Anticipation of moving stimuli by the retina. Nature. 1999;398(6725):334–8. PMID: 10192333
    Reference Link
  • 1.
    Marre O, Botella-Soler V, Simmons K, Mora T, Tkačik G, Berry M. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. PLoS Comput Biol. 2015;11(7):e1004304. PMCID: PMC4489022
    Reference Link

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