Genotype

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Rubbi L, Zhang H, Feng J, He C, Kurnia P, Ratan P, Tammana A, House S, Thompson M, Farrell C, Snir S, Stahler D, Ostrander E, vonHoldt B, Pellegrini M. The effects of age, sex, weight, and breed on canid methylomes. Epigenetics. 2022;17(11):1497–1512. PMCID: PMC9586589

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Ochoa A, Storey J. Estimating FST and kinship for arbitrary population structures. PLoS Genet. 2021;17(1):e1009241. PMCID: PMC7846127

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Sealfon R, Mariani L, Kretzler M, Troyanskaya O. Machine learning, the kidney, and genotype-phenotype analysis. Kidney Int. 2020;97(6):1141–1149. PMCID: PMC8048707

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Goodwin K, Mao S, Guyomar T, Miller E, Radisky D, Košmrlj A, Nelson C. Smooth muscle differentiation shapes domain branches during mouse lung development. Development. 2019;146(22). PMCID: PMC6899029

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MacLean E, Snyder-Mackler N, vonHoldt B, Serpell J. Highly heritable and functionally relevant breed differences in dog behaviour. Proc Biol Sci. 2019;286(1912):20190716. PMCID: PMC6790757

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Hendricks S, Schweizer R, Harrigan R, Pollinger J, Paquet P, Darimont C, Adams J, Waits L, vonHoldt B, Hohenlohe P, Wayne R. Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity (Edinb). 2019;122(2):133–149. PMCID: PMC6327037

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Robinson J, Del Vecchyo D, Fan Z, Kim B, vonHoldt B, Marsden C, Lohmueller K, Wayne R. Genomic Flatlining in the Endangered Island Fox. Curr Biol. 2016;26(9):1183–9. PMID: 27112291

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Keenan S, Shvartsman S. Mechanisms and causality in molecular diseases. Hist Philos Life Sci. 2017;39(4):35. PMCID: PMC6445273

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Hao W, Song M, Storey J. Probabilistic models of genetic variation in structured populations applied to global human studies. Bioinformatics. 2016;32(5):713–21. PMCID: PMC4795615

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Li D, Wang X, von Schaewen M, Tao W, Zhang Y, Heller B, Hrebikova G, Deng Q, Sun Q, Ploss A, Zhong J, Huang Z. Immunization With a Subunit Hepatitis C Virus Vaccine Elicits Pan-Genotypic Neutralizing Antibodies and Intrahepatic T-Cell Responses in Nonhuman Primates. J Infect Dis. 2017;215(12):1824–1831. PMCID: PMC5853543

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Schumer M, Cui R, Rosenthal G, Andolfatto P. simMSG: an experimental design tool for high-throughput genotyping of hybrids. Mol Ecol Resour. 2016;16(1):183–92. PMID: 26032857

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Smith H, White B, Kundert P, Cheng C, Romero-Severson J, Andolfatto P, Besansky N. Genome-wide QTL mapping of saltwater tolerance in sibling species of Anopheles (malaria vector) mosquitoes. Heredity (Edinb). 2015;115(5):471–9. PMCID: PMC4611235

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vonHoldt B, Pollinger J, Earl D, Knowles J, Boyko A, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, Bustamante C, Ostrander E, Novembre J, Wayne R. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res. 2011;21(8):1294–305. PMCID: PMC3149496

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Schweizer R, vonHoldt B, Harrigan R, Knowles J, Musiani M, Coltman D, Novembre J, Wayne R. Genetic subdivision and candidate genes under selection in North American grey wolves. Mol Ecol. 2016;25(1):380–402. PMID: 26333947

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Rogers R, Cridland J, Shao L, Hu T, Andolfatto P, Thornton K. Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans. Mol Biol Evol. 2014;31(7):1750–66. PMCID: PMC4069613

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Lee D, Brooks-Gunn J, McLanahan S, Notterman D, Garfinkel I. The Great Recession, genetic sensitivity, and maternal harsh parenting. Proc Natl Acad Sci U S A. 2013;110(34):13780–4. PMCID: PMC3752274

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Perin P, Haid S, Brown R, Doerrbecker J, Schulze K, Zeilinger C, von Schaewen M, Heller B, Vercauteren K, Luxenburger E, Baktash Y, Vondran F, Speerstra S, Awadh A, Mukhtarov F, Schang L, Kirschning A, Müller R, Guzman C, Kaderali L, Randall G, Meuleman P, Ploss A, Pietschmann T. Flunarizine prevents hepatitis C virus membrane fusion in a genotype-dependent manner by targeting the potential fusion peptide within E1. Hepatology. 2016;63(1):49–62. PMCID: PMC4688136

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Li W, Klovstad M, Schüpbach T. Repression of Gurken translation by a meiotic checkpoint in Drosophila oogenesis is suppressed by a reduction in the dose of eIF1A. Development. 2014;141(20):3910–21. PMCID: PMC4197705

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