Treen N, Chavarria E, Weaver C, Brangwynne C, Levine M. An FGF timer for zygotic genome activation. Genes Dev. 2023;37(3-4):80–85. PMCID: PMC10069452

Nguyen T, Costa E, Deibert T, Reyes J, Keber F, Tomschik M, Stadlmeier M, Gupta M, Kumar C, Cruz E, Amodeo A, Gatlin J, Wühr M. Differential nuclear import sets the timing of protein access to the embryonic genome. Nat Commun. 2022;13(1):5887. PMCID: PMC9537182

Levo M, Raimundo J, Bing X, Sisco Z, Batut P, Ryabichko S, Gregor T, Levine M. Transcriptional coupling of distant regulatory genes in living embryos. Nature. 2022;605(7911):754–760. PMCID: PMC9886134

vonHoldt B, Brzeski K, Aardema M, Schell C, Rutledge L, Fain S, Shutt A, Linderholm A, Murphy W. Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast. Mol Ecol. 2022;31(21):5440–5454. PMID: 34585803

Bredemeyer K, Seabury C, Stickney M, McCarrey J, vonHoldt B, Murphy W. Rapid Macrosatellite Evolution Promotes X-Linked Hybrid Male Sterility in a Feline Interspecies Cross. Mol Biol Evol. 2021;38(12):5588–5609. PMCID: PMC8662614

Ing-Simmons E, Vaid R, Bing X, Levine M, Mannervik M, Vaquerizas J. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021;53(4):487–499. PMCID: PMC8035076

Moore R, Kaletsky R, Lesnik C, Cota V, Blackman E, Parsons L, Gitai Z, Murphy C. The role of the Cer1 transposon in horizontal transfer of transgenerational memory. Cell. 2021;184(18):4697–4712.e18. PMCID: PMC8812995

Taron U, Salado I, Escobar-Rodríguez M, Westbury M, Butschkau S, Paijmans J, vonHoldt B, Hofreiter M, Leonard J. A sliver of the past: The decimation of the genetic diversity of the Mexican wolf. Mol Ecol. 2021;30(23):6340–6354. PMID: 34161633

Nollmann M, Bennabi I, Götz M, Gregor T. The Impact of Space and Time on the Functional Output of the Genome. Cold Spring Harb Perspect Biol. 2022;14(4). PMCID: PMC8733053

Kloosterman A, Cimermancic P, Elsayed S, Du C, Hadjithomas M, Donia M, Fischbach M, van Wezel G, Medema M. Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides. PLoS Biol. 2020;18(12):e3001026. PMCID: PMC7794033

Anlas A, Nelson C. Living under Strain: How Epithelia Protect Their Genomes from Repeated Stretching. Biochemistry. 2020;59(30):2761–2763. PMID: 32702973

Yan J, Cirincione A, Adamson B. Prime Editing: Precision Genome Editing by Reverse Transcription. Mol Cell. 2020;77(2):210–212. PMID: 31951546

Gu B, Gertsenstein M, Posfai E. Generation of Large Fragment Knock-In Mouse Models by Microinjecting into 2-Cell Stage Embryos. Methods Mol Biol. 2020;2066:89–100. PMID: 31512209

MacLean E, Snyder-Mackler N, vonHoldt B, Serpell J. Highly heritable and functionally relevant breed differences in dog behaviour. Proc Biol Sci. 2019;286(1912):20190716. PMCID: PMC6790757

Cheung-Lee W, Link J. Genome mining for lasso peptides: past, present, and future. J Ind Microbiol Biotechnol. 2019;46(9-10):1371–1379. PMCID: PMC6989040

Li X, Patena W, Fauser F, Jinkerson R, Saroussi S, Meyer M, Ivanova N, Robertson J, Yue R, Zhang R, Vilarrasa-Blasi J, Wittkopp T, Ramundo S, Blum S, Goh A, Laudon M, Srikumar T, Lefebvre P, Grossman A, Jonikas M. A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis. Nat Genet. 2019;51(4):627–635. PMCID: PMC6636631

Sigoillot F, Lyman S, Huckins J, Adamson B, Chung E, Quattrochi B, King R. A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens. Nat Methods. 2012;9(4):363–6. PMCID: PMC3482495

Schumer M, Powell D, Delclós P, Squire M, Cui R, Andolfatto P, Rosenthal G. Assortative mating and persistent reproductive isolation in hybrids. Proc Natl Acad Sci U S A. 2017;114(41):10936–10941. PMCID: PMC5642718

Celià-Terrassa T, Kang Y. Mouse genomic screen reveals novel host regulator of metastasis. Genome Biol. 2017;18(1):31. PMCID: PMC5314612

vonHoldt B, Pollinger J, Earl D, Knowles J, Boyko A, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, Bustamante C, Ostrander E, Novembre J, Wayne R. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res. 2011;21(8):1294–305. PMCID: PMC3149496

Pritykin Y, Ghersi D, Singh M. Genome-Wide Detection and Analysis of Multifunctional Genes. PLoS Comput Biol. 2015;11(10):e1004467. PMCID: PMC4593560

Rogers R, Shao L, Sanjak J, Andolfatto P, Thornton K. Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group. G3 (Bethesda). 2014;4(12):2345–51. PMCID: PMC4267930

Rogers R, Cridland J, Shao L, Hu T, Andolfatto P, Thornton K. Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans. Mol Biol Evol. 2014;31(7):1750–66. PMCID: PMC4069613

Schumer M, Cui R, Powell D, Rosenthal G, Andolfatto P. Ancient hybridization and genomic stabilization in a swordtail fish. Mol Ecol. 2016;25(11):2661–79. PMID: 26937625