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Genome

  • 1.
    Treen N, Chavarria E, Weaver C, Brangwynne C, Levine M. An FGF timer for zygotic genome activation. Genes Dev. 2023;37(3-4):80–85. PMCID: PMC10069452
    Reference Link
  • 1.
    Nguyen T, Costa E, Deibert T, Reyes J, Keber F, Tomschik M, Stadlmeier M, Gupta M, Kumar C, Cruz E, Amodeo A, Gatlin J, Wühr M. Differential nuclear import sets the timing of protein access to the embryonic genome. Nat Commun. 2022;13(1):5887. PMCID: PMC9537182
    Reference Link
  • 1.
    Levo M, Raimundo J, Bing X, Sisco Z, Batut P, Ryabichko S, Gregor T, Levine M. Transcriptional coupling of distant regulatory genes in living embryos. Nature. 2022;605(7911):754–760. PMCID: PMC9886134
    Reference Link
  • 1.
    vonHoldt B, Brzeski K, Aardema M, Schell C, Rutledge L, Fain S, Shutt A, Linderholm A, Murphy W. Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast. Mol Ecol. 2022;31(21):5440–5454. PMID: 34585803
    Reference Link
  • 1.
    Bredemeyer K, Seabury C, Stickney M, McCarrey J, vonHoldt B, Murphy W. Rapid Macrosatellite Evolution Promotes X-Linked Hybrid Male Sterility in a Feline Interspecies Cross. Mol Biol Evol. 2021;38(12):5588–5609. PMCID: PMC8662614
    Reference Link
  • 1.
    Ing-Simmons E, Vaid R, Bing X, Levine M, Mannervik M, Vaquerizas J. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021;53(4):487–499. PMCID: PMC8035076
    Reference Link
  • 1.
    Moore R, Kaletsky R, Lesnik C, Cota V, Blackman E, Parsons L, Gitai Z, Murphy C. The role of the Cer1 transposon in horizontal transfer of transgenerational memory. Cell. 2021;184(18):4697–4712.e18. PMCID: PMC8812995
    Reference Link
  • 1.
    Taron U, Salado I, Escobar-Rodríguez M, Westbury M, Butschkau S, Paijmans J, vonHoldt B, Hofreiter M, Leonard J. A sliver of the past: The decimation of the genetic diversity of the Mexican wolf. Mol Ecol. 2021;30(23):6340–6354. PMID: 34161633
    Reference Link
  • 1.
    Nollmann M, Bennabi I, Götz M, Gregor T. The Impact of Space and Time on the Functional Output of the Genome. Cold Spring Harb Perspect Biol. 2022;14(4). PMCID: PMC8733053
    Reference Link
  • 1.
    Kloosterman A, Cimermancic P, Elsayed S, Du C, Hadjithomas M, Donia M, Fischbach M, van Wezel G, Medema M. Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides. PLoS Biol. 2020;18(12):e3001026. PMCID: PMC7794033
    Reference Link
  • 1.
    Anlas A, Nelson C. Living under Strain: How Epithelia Protect Their Genomes from Repeated Stretching. Biochemistry. 2020;59(30):2761–2763. PMID: 32702973
    Reference Link
  • 1.
    Yan J, Cirincione A, Adamson B. Prime Editing: Precision Genome Editing by Reverse Transcription. Mol Cell. 2020;77(2):210–212. PMID: 31951546
    Reference Link
  • 1.
    Gu B, Gertsenstein M, Posfai E. Generation of Large Fragment Knock-In Mouse Models by Microinjecting into 2-Cell Stage Embryos. Methods Mol Biol. 2020;2066:89–100. PMID: 31512209
    Reference Link
  • 1.
    MacLean E, Snyder-Mackler N, vonHoldt B, Serpell J. Highly heritable and functionally relevant breed differences in dog behaviour. Proc Biol Sci. 2019;286(1912):20190716. PMCID: PMC6790757
    Reference Link
  • 1.
    Cheung-Lee W, Link J. Genome mining for lasso peptides: past, present, and future. J Ind Microbiol Biotechnol. 2019;46(9-10):1371–1379. PMCID: PMC6989040
    Reference Link
  • 1.
    Li X, Patena W, Fauser F, Jinkerson R, Saroussi S, Meyer M, Ivanova N, Robertson J, Yue R, Zhang R, Vilarrasa-Blasi J, Wittkopp T, Ramundo S, Blum S, Goh A, Laudon M, Srikumar T, Lefebvre P, Grossman A, Jonikas M. A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis. Nat Genet. 2019;51(4):627–635. PMCID: PMC6636631
    Reference Link
  • 1.
    Sigoillot F, Lyman S, Huckins J, Adamson B, Chung E, Quattrochi B, King R. A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens. Nat Methods. 2012;9(4):363–6. PMCID: PMC3482495
    Reference Link
  • 1.
    Schumer M, Powell D, Delclós P, Squire M, Cui R, Andolfatto P, Rosenthal G. Assortative mating and persistent reproductive isolation in hybrids. Proc Natl Acad Sci U S A. 2017;114(41):10936–10941. PMCID: PMC5642718
    Reference Link
  • 1.
    Celià-Terrassa T, Kang Y. Mouse genomic screen reveals novel host regulator of metastasis. Genome Biol. 2017;18(1):31. PMCID: PMC5314612
    Reference Link
  • 1.
    vonHoldt B, Pollinger J, Earl D, Knowles J, Boyko A, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, Bustamante C, Ostrander E, Novembre J, Wayne R. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res. 2011;21(8):1294–305. PMCID: PMC3149496
    Reference Link
  • 1.
    Pritykin Y, Ghersi D, Singh M. Genome-Wide Detection and Analysis of Multifunctional Genes. PLoS Comput Biol. 2015;11(10):e1004467. PMCID: PMC4593560
    Reference Link
  • 1.
    Rogers R, Shao L, Sanjak J, Andolfatto P, Thornton K. Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group. G3 (Bethesda). 2014;4(12):2345–51. PMCID: PMC4267930
    Reference Link
  • 1.
    Rogers R, Cridland J, Shao L, Hu T, Andolfatto P, Thornton K. Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans. Mol Biol Evol. 2014;31(7):1750–66. PMCID: PMC4069613
    Reference Link
  • 1.
    Schumer M, Cui R, Powell D, Rosenthal G, Andolfatto P. Ancient hybridization and genomic stabilization in a swordtail fish. Mol Ecol. 2016;25(11):2661–79. PMID: 26937625
    Reference Link

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