Wong A, Sealfon R, Theesfeld C, Troyanskaya O. Decoding disease: from genomes to networks to phenotypes. Nat Rev Genet. 2021;22(12):774–790. PMCID: 6786975

Park C, Zhou J, Wong A, Chen K, Theesfeld C, Darnell R, Troyanskaya O. Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk. Nat Genet. 2021;53(2):166–173. PMCID: PMC7886016

Richter F, Morton S, Kim S, Kitaygorodsky A, Wasson L, Chen K, Zhou J, Qi H, Patel N, DePalma S, Parfenov M, Homsy J, Gorham J, Manheimer K, Velinder M, Farrell A, Marth G, Schadt E, Kaltman J, Newburger J, Giardini A, Goldmuntz E, Brueckner M, Kim R, Porter G, Bernstein D, Chung W, Srivastava D, Tristani-Firouzi M, Troyanskaya O, Dickel D, Shen Y, Seidman J, Seidman C, Gelb B. Genomic analyses implicate noncoding de novo variants in congenital heart disease. Nat Genet. 2020;52(8):769–777. PMCID: PMC7415662

Zhou J, Park C, Theesfeld C, Wong A, Yuan Y, Scheckel C, Fak J, Funk J, Yao K, Tajima Y, Packer A, Darnell R, Troyanskaya O. Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk. Nat Genet. 2019;51(6):973–980. PMCID: PMC6758908

Shrine N, Guyatt A, Erzurumluoglu M, Jackson V, Hobbs B, Melbourne C, Batini C, Fawcett K, Song K, Sakornsakolpat P, Li X, Boxall R, Reeve N, Obeidat M, Zhao J, Wielscher M, Weiss S, Kentistou K, Cook J, Sun B, Zhou J, Hui J, Karrasch S, Imboden M, Harris S, Marten J, Enroth S, Kerr S, Surakka I, Vitart V, Lehtimäki T, Allen R, Bakke P, Beaty T, Bleecker E, Bossé Y, Brandsma C-A, Chen Z, Crapo J, Danesh J, DeMeo D, Dudbridge F, Ewert R, Gieger C, Gulsvik A, Hansell A, Hao K, Hoffman J, Hokanson J, Homuth G, Joshi P, Joubert P, Langenberg C, Li X, Li L, Lin K, Lind L, Locantore N, Luan J, Mahajan A, Maranville J, Murray A, Nickle D, Packer R, Parker M, Paynton M, Porteous D, Prokopenko D, Qiao D, Rawal R, Runz H, Sayers I, Sin D, Smith B, Artigas M, Sparrow D, Tal-Singer R, Timmers P, Van den Berge M, Whittaker J, Woodruff P, Yerges-Armstrong L, Troyanskaya O, Raitakari O, Kähönen M, Polašek O, Gyllensten U, Rudan I, Deary I, Probst-Hensch N, Schulz H, James A, Wilson J, Stubbe B, Zeggini E, Jarvelin M-R, Wareham N, Silverman E, Hayward C, Morris A, Butterworth A, Scott R, Walters R, Meyers D, Cho M, Strachan D, Hall I, Tobin M, Wain L, Understanding Society Scientific Group. New genetic signals for lung function highlight pathways and chronic obstructive pulmonary disease associations across multiple ancestries. Nat Genet. 2019;51(3):481–493. PMCID: PMC6397078

Yao V, Wong A, Troyanskaya O. Enabling Precision Medicine through Integrative Network Models. J Mol Biol. 2018;430(18 Pt A):2913–2923. PMID: 30003887

Zhou J, Theesfeld C, Yao K, Chen K, Wong A, Troyanskaya O. Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk. Nat Genet. 2018;50(8):1171–1179. PMCID: PMC6094955

Cadoff E, Sheffer R, Wientroub S, Ovadia D, Meiner V, Schwarzbauer J. Mechanistic insights into the cellular effects of a novel FN1 variant associated with a spondylometaphyseal dysplasia. Clin Genet. 2018;94(5):429–437. PMCID: PMC6175647

Przytycki P, Singh M. Differential analysis between somatic mutation and germline variation profiles reveals cancer-related genes. Genome Med. 2017;9(1):79. PMCID: PMC5574113

vonHoldt B, Shuldiner E, Koch I, Kartzinel R, Hogan A, Brubaker L, Wanser S, Stahler D, Wynne C, Ostrander E, Sinsheimer J, Udell M. Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Sci Adv. 2017;3(7):e1700398. PMCID: PMC5517105

Pujol F, Hodgson T, Martinez-Corral I, Prats A-C, Devenport D, Takeichi M, Genot E, Mäkinen T, Francis-West P, Garmy-Susini B, Tatin F. Dachsous1-Fat4 Signaling Controls Endothelial Cell Polarization During Lymphatic Valve Morphogenesis-Brief Report. Arterioscler Thromb Vasc Biol. 2017;37(9):1732–1735. PMID: 28705793

Chikina M, Gerald C, Li X, Ge Y, Pincas H, Nair V, Wong A, Krishnan A, Troyanskaya O, Raymond D, Saunders-Pullman R, Bressman S, Yue Z, Sealfon S. Low-variance RNAs identify Parkinson’s disease molecular signature in blood. Mov Disord. 2015;30(6):813–21. PMCID: PMC4439364

Gopalan P, Hao W, Blei D, Storey J. Scaling probabilistic models of genetic variation to millions of humans. Nat Genet. 2016;48(12):1587–1590. PMCID: PMC5127768

Krishnan A, Zhang R, Yao V, Theesfeld C, Wong A, Tadych A, Volfovsky N, Packer A, Lash A, Troyanskaya O. Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder. Nat Neurosci. 2016;19(11):1454–1462. PMCID: PMC5803797

Zong W-X, Rabinowitz J, White E. Mitochondria and Cancer. Mol Cell. 2016;61(5):667–676. PMCID: PMC4779192

Mitchell C, McLanahan S, Brooks-Gunn J, Garfinkel I, Hobcraft J, Notterman D. Genetic differential sensitivity to social environments: implications for research. Am J Public Health. 2013;103 Suppl 1(Suppl 1):S102–10. PMCID: PMC4012542