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Genes, Bacterial

  • 1.
    Sanfilippo J, Lorestani A, Koch M, Bratton B, Siryaporn A, Stone H, Gitai Z. Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. Nat Microbiol. 2019;4(8):1274–1281. PMCID: PMC6656604
    Reference Link
  • 1.
    Aedo S, Ma H, Brynildsen M. Checks and Balances with Use of the Keio Collection for Phenotype Testing. Methods Mol Biol. 2019;1927:125–138. PMID: 30788789
    Reference Link
  • 1.
    Trivedi R, Crooks J, Auer G, Pendry J, Foik I, Siryaporn A, Abbott N, Gitai Z, Weibel D. Mechanical Genomic Studies Reveal the Role of d-Alanine Metabolism in Pseudomonas aeruginosa Cell Stiffness. mBio. 2018;9(5). PMCID: PMC6134093
    Reference Link
  • 1.
    Okada B, Wu Y, Mao D, Bushin L, Seyedsayamdost M. Mapping the Trimethoprim-Induced Secondary Metabolome of Burkholderia thailandensis. ACS Chem Biol. 2016;11(8):2124–30. PMCID: PMC6786267
    Reference Link
  • 1.
    Seyedsayamdost M. High-throughput platform for the discovery of elicitors of silent bacterial gene clusters. Proc Natl Acad Sci U S A. 2014;111(20):7266–71. PMCID: PMC4034229
    Reference Link
  • 1.
    Baym M, Shaket L, Anzai I, Adesina O, Barstow B. Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku. Nat Commun. 2016;7:13270. PMCID: PMC5109470
    Reference Link
  • 1.
    Seyedsayamdost M, Cleto S, Carr G, Vlamakis H, Vieira M, Kolter R, Clardy J. Mixing and matching siderophore clusters: structure and biosynthesis of serratiochelins from Serratia sp. V4. J Am Chem Soc. 2012;134(33):13550–3. PMCID: PMC3424848
    Reference Link
  • 1.
    Persat A, Inclan Y, Engel J, Stone H, Gitai Z. Type IV pili mechanochemically regulate virulence factors in Pseudomonas aeruginosa. Proc Natl Acad Sci U S A. 2015;112(24):7563–8. PMCID: PMC4475988
    Reference Link
  • 1.
    Bassler B, Gibbons P, Yu C, Roseman S. Chitin utilization by marine bacteria. Chemotaxis to chitin oligosaccharides by Vibrio furnissii. J Biol Chem. 1991;266(36):24268–75. PMID: 1761532
    Reference Link
  • 1.
    Bassler B, Yu C, Lee Y, Roseman S. Chitin utilization by marine bacteria. Degradation and catabolism of chitin oligosaccharides by Vibrio furnissii. J Biol Chem. 1991;266(36):24276–86. PMID: 1761533
    Reference Link
  • 1.
    Bassler B, Wright M, Showalter R, Silverman M. Intercellular signalling in Vibrio harveyi: sequence and function of genes regulating expression of luminescence. Mol Microbiol. 1993;9(4):773–86. PMID: 8231809
    Reference Link
  • 1.
    Bassler B, Wright M, Silverman M. Sequence and function of LuxO, a negative regulator of luminescence in Vibrio harveyi. Mol Microbiol. 1994;12(3):403–12. PMID: 8065259
    Reference Link
  • 1.
    Surette M, Miller M, Bassler B. Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio harveyi: a new family of genes responsible for autoinducer production. Proc Natl Acad Sci U S A. 1999;96(4):1639–44. PMCID: PMC15544
    Reference Link
  • 1.
    Zhu J, Miller M, Vance R, Dziejman M, Bassler B, Mekalanos J. Quorum-sensing regulators control virulence gene expression in Vibrio cholerae. Proc Natl Acad Sci U S A. 2002;99(5):3129–34. PMCID: PMC122484
    Reference Link
  • 1.
    Hammer B, Bassler B. Quorum sensing controls biofilm formation in Vibrio cholerae. Mol Microbiol. 2003;50(1):101–4. PMID: 14507367
    Reference Link
  • 1.
    Lenz D, Mok K, Lilley B, Kulkarni R, Wingreen N, Bassler B. The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae. Cell. 2004;118(1):69–82. PMID: 15242645
    Reference Link
  • 1.
    Camilli A, Bassler B. Bacterial small-molecule signaling pathways. Science. 2006;311(5764):1113–6. PMCID: PMC2776824
    Reference Link
  • 1.
    Pompeani A, Irgon J, Berger M, Bulyk M, Wingreen N, Bassler B. The Vibrio harveyi master quorum-sensing regulator, LuxR, a TetR-type protein is both an activator and a repressor: DNA recognition and binding specificity at target promoters. Mol Microbiol. 2008;70(1):76–88. PMCID: PMC2628434
    Reference Link
  • 1.
    Tu K, Waters C, Svenningsen S, Bassler B. A small-RNA-mediated negative feedback loop controls quorum-sensing dynamics in Vibrio harveyi. Mol Microbiol. 2008;70(4):896–907. PMCID: PMC2680268
    Reference Link
  • 1.
    Ng W-L, Wei Y, Perez L, Cong J, Long T, Koch M, Semmelhack M, Wingreen N, Bassler B. Probing bacterial transmembrane histidine kinase receptor-ligand interactions with natural and synthetic molecules. Proc Natl Acad Sci U S A. 2010;107(12):5575–80. PMCID: PMC2851778
    Reference Link
  • 1.
    Papenfort K, Förstner K, Cong J-P, Sharma C, Bassler B. Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proc Natl Acad Sci U S A. 2015;112(7):E766–75. PMCID: PMC4343088
    Reference Link

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