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Escherichia coli

  • 1.
    Zhang D, Li S, King C, Wingreen N, Gitai Z, Li Z. Global and gene-specific translational regulation in Escherichia coli across different conditions. PLoS Comput Biol. 2022;18(10):e1010641. PMCID: PMC9624429
    Reference Link
  • 1.
    Amin J, Zhao T, Yang H, Shaevitz J. Multicolor multifocal 3D microscopy using in-situ optimization of a spatial light modulator. Sci Rep. 2022;12(1):16343. PMCID: PMC9522655
    Reference Link
  • 1.
    Ruiz N, Silhavy T. How Escherichia coli Became the Flagship Bacterium of Molecular Biology. J Bacteriol. 2022;204(9):e0023022. PMCID: PMC9487582
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  • 1.
    Hoffman S, Lalwani M, Avalos J. Light-Controlled Fermentations for Microbial Chemical and Protein Production. J Vis Exp. 2022;(181). PMID: 35404352
    Reference Link
  • 1.
    Doyle M, Jimah J, Dowdy T, Ohlemacher S, Larion M, Hinshaw J, Bernstein H. Cryo-EM structures reveal multiple stages of bacterial outer membrane protein folding. Cell. 2022;185(7):1143–1156.e13. PMCID: PMC8985213
    Reference Link
  • 1.
    Benn G, Mikheyeva I, Inns P, Forster J, Ojkic N, Bortolini C, Ryadnov M, Kleanthous C, Silhavy T, Hoogenboom B. Phase separation in the outer membrane of . Proc Natl Acad Sci U S A. 2021;118(44). PMCID: PMC8612244
    Reference Link
  • 1.
    Miangolarra M, Li S, Joanny J-F, Wingreen N, Castellana M. Steric interactions and out-of-equilibrium processes control the internal organization of bacteria. Proc Natl Acad Sci U S A. 2021;118(43). PMCID: PMC8639350
    Reference Link
  • 1.
    Wan X, Brynildsen M. Robustness of nitric oxide detoxification to nitrogen starvation in Escherichia coli requires RelA. Free Radic Biol Med. 2021;176:286–297. PMID: 34624482
    Reference Link
  • 1.
    Lemma A, Brynildsen M. Toxin Induction or Inhibition of Transcription or Translation Posttreatment Increases Persistence to Fluoroquinolones. mBio. 2021;12(4):e0198321. PMCID: PMC8406316
    Reference Link
  • 1.
    Lalwani M, Kawabe H, Mays R, Hoffman S, Avalos J. Optogenetic Control of Microbial Consortia Populations for Chemical Production. ACS Synth Biol. 2021;10(8):2015–2029. PMID: 34351122
    Reference Link
  • 1.
    Balo A, Caruso A, Tao L, Tantillo D, Seyedsayamdost M, Britt D. Trapping a cross-linked lysine-tryptophan radical in the catalytic cycle of the radical SAM enzyme SuiB. Proc Natl Acad Sci U S A. 2021;118(21). PMCID: PMC8166192
    Reference Link
  • 1.
    Murawski A, Brynildsen M. Ploidy is an important determinant of fluoroquinolone persister survival. Curr Biol. 2021;31(10):2039–2050.e7. PMCID: PMC8183807
    Reference Link
  • 1.
    Sivaloganathan D, Brynildsen M. Pseudomonas aeruginosa prioritizes detoxification of hydrogen peroxide over nitric oxide. BMC Res Notes. 2021;14(1):120. PMCID: PMC7995768
    Reference Link
  • 1.
    Eickhoff M, Fei C, Huang X, Bassler B. LuxT controls specific quorum-sensing-regulated behaviors in Vibrionaceae spp. via repression of qrr1, encoding a small regulatory RNA. PLoS Genet. 2021;17(4):e1009336. PMCID: PMC8043402
    Reference Link
  • 1.
    Seath C, Trowbridge A, Muir T, MacMillan D. Reactive intermediates for interactome mapping. Chem Soc Rev. 2021;50(5):2911–2926. PMID: 33458734
    Reference Link
  • 1.
    Franklin E, Jonikas M. Increasing the uptake of carbon dioxide. Elife. 2020;9. PMCID: PMC7714390
    Reference Link
  • 1.
    Guest R, Rutherford S, Silhavy T. Border Control: Regulating LPS Biogenesis. Trends Microbiol. 2021;29(4):334–345. PMCID: PMC7969359
    Reference Link
  • 1.
    Lalwani M, Ip S, Carrasco-López C, Day C, Zhao E, Kawabe H, Avalos J. Optogenetic control of the lac operon for bacterial chemical and protein production. Nat Chem Biol. 2021;17(1):71–79. PMCID: 5876151
    Reference Link
  • 1.
    Hart E, Silhavy T. Functions of the BamBCDE Lipoproteins Revealed by Bypass Mutations in BamA. J Bacteriol. 2020;202(21). PMCID: PMC7549358
    Reference Link
  • 1.
    Carrasco-López C, Zhao E, Gil A, Alam N, Toettcher J, Avalos J. Development of light-responsive protein binding in the monobody non-immunoglobulin scaffold. Nat Commun. 2020;11(1):4045. PMCID: PMC7427095
    Reference Link
  • 1.
    Yao X, Fan X, Yan N. Cryo-EM analysis of a membrane protein embedded in the liposome. Proc Natl Acad Sci U S A. 2020;117(31):18497–18503. PMCID: PMC7414195
    Reference Link
  • 1.
    Hart E, Gupta M, Wühr M, Silhavy T. The gain-of-function allele bypasses the essential requirement for BamD in β-barrel outer membrane protein assembly. Proc Natl Acad Sci U S A. 2020;117(31):18737–18743. PMCID: PMC7414184
    Reference Link
  • 1.
    Alfaro-Aco R, Thawani A, Petry S. Biochemical reconstitution of branching microtubule nucleation. Elife. 2020;9. PMCID: PMC6959992
    Reference Link
  • 1.
    Freije C, Myhrvold C, Boehm C, Lin A, Welch N, Carter A, Metsky H, Luo C, Abudayyeh O, Gootenberg J, Yozwiak N, Zhang F, Sabeti P. Programmable Inhibition and Detection of RNA Viruses Using Cas13. Mol Cell. 2019;76(5):826–837.e11. PMCID: PMC7422627
    Reference Link
  • 1.
    Guest R, Guerra D, Wissler M, Grimm J, Silhavy T. YejM Modulates Activity of the YciM/FtsH Protease Complex To Prevent Lethal Accumulation of Lipopolysaccharide. mBio. 2020;11(2). PMCID: PMC7157816
    Reference Link
  • 1.
    Silpe J, Bridges A, Huang X, Coronado D, Duddy O, Bassler B. Separating Functions of the Phage-Encoded Quorum-Sensing-Activated Antirepressor Qtip. Cell Host Microbe. 2020;27(4):629–641.e4. PMCID: PMC7148176
    Reference Link
  • 1.
    Park J-D, Moon K, Miller C, Rose J, Xu F, Ebmeier C, Jacobsen J, Mao D, Old W, DeShazer D, Seyedsayamdost M. Thailandenes, Cryptic Polyene Natural Products Isolated from Using Phenotype-Guided Transposon Mutagenesis. ACS Chem Biol. 2020;15(5):1195–1203. PMCID: PMC9106368
    Reference Link
  • 1.
    Sivaloganathan D, Wan X, Brynildsen M. Quantifying Nitric Oxide Flux Distributions. Methods Mol Biol. 2020;2088:161–188. PMID: 31893374
    Reference Link
  • 1.
    Bushin L, Clark K, Pelczer I, Seyedsayamdost M. Charting an Unexplored Streptococcal Biosynthetic Landscape Reveals a Unique Peptide Cyclization Motif. J Am Chem Soc. 2018;140(50):17674–17684. PMID: 30398325
    Reference Link
  • 1.
    Hart E, Mitchell A, Konovalova A, Grabowicz M, Sheng J, Han X, Rodriguez-Rivera F, Schwaid A, Malinverni J, Balibar C, Bodea S, Si Q, Wang H, Homsher M, Painter R, Ogawa A, Sutterlin H, Roemer T, Black T, Rothman D, Walker S, Silhavy T. A small-molecule inhibitor of BamA impervious to efflux and the outer membrane permeability barrier. Proc Natl Acad Sci U S A. 2019;116(43):21748–21757. PMCID: PMC6815139
    Reference Link
  • 1.
    Park J, Tanner L, Wei M, Khana D, Jacobson T, Zhang Z, Rubin S, Li S, Higgins M, Stevenson D, Amador-Noguez D, Rabinowitz J. Near-equilibrium glycolysis supports metabolic homeostasis and energy yield. Nat Chem Biol. 2019;15(10):1001–1008. PMID: 31548693
    Reference Link
  • 1.
    Schober A, Mathis A, Ingle C, Park J, Chen L, Rabinowitz J, Junier I, Rivoire O, Reynolds K. A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism. Cell Rep. 2019;27(11):3359–3370.e7. PMCID: PMC6625508
    Reference Link
  • 1.
    Adolfsen K, Chou W, Brynildsen M. Transcriptional Regulation Contributes to Prioritized Detoxification of Hydrogen Peroxide over Nitric Oxide. J Bacteriol. 2019;201(14). PMCID: PMC6597392
    Reference Link
  • 1.
    Aedo S, Orman M, Brynildsen M. Stationary phase persister formation in Escherichia coli can be suppressed by piperacillin and PBP3 inhibition. BMC Microbiol. 2019;19(1):140. PMCID: PMC6591824
    Reference Link
  • 1.
    Hart E, Gupta M, Wühr M, Silhavy T. The Synthetic Phenotype of Δ Δ Double Mutants Results from a Lethal Jamming of the Bam Complex by the Lipoprotein RcsF. mBio. 2019;10(3). PMCID: PMC6529638
    Reference Link
  • 1.
    Silhavy T, Mitchell A. Genetic Analysis of Protein Translocation. Protein J. 2019;38(3):217–228. PMCID: PMC6589372
    Reference Link
  • 1.
    Stubbe J, Seyedsayamdost M. Discovery of a New Class I Ribonucleotide Reductase with an Essential DOPA Radical and NO Metal as an Initiator of Long-Range Radical Transfer. Biochemistry. 2019;58(6):435–437. PMID: 30586288
    Reference Link
  • 1.
    Ricci D, Silhavy T. Outer Membrane Protein Insertion by the β-barrel Assembly Machine. EcoSal Plus. 2019;8(2). PMCID: PMC6419762
    Reference Link
  • 1.
    Paczkowski J, McCready A, Cong J-P, Li Z, Jeffrey P, Smith C, Henke B, Hughson F, Bassler B. An Autoinducer Analogue Reveals an Alternative Mode of Ligand Binding for the LasR Quorum-Sensing Receptor. ACS Chem Biol. 2019;14(3):378–389. PMCID: PMC6601336
    Reference Link
  • 1.
    Barrett T, Mok W, Murawski A, Brynildsen M. Enhanced antibiotic resistance development from fluoroquinolone persisters after a single exposure to antibiotic. Nat Commun. 2019;10(1):1177. PMCID: PMC6414640
    Reference Link
  • 1.
    Hart E, O’Connell A, Tang K, Wzorek J, Grabowicz M, Kahne D, Silhavy T. Fine-Tuning of σ Activation Suppresses Multiple Assembly-Defective Mutations in Escherichia coli. J Bacteriol. 2019;201(11). PMCID: PMC6509652
    Reference Link
  • 1.
    Cheung-Lee W, Parry M, Cartagena A, Darst S, Link J. Discovery and structure of the antimicrobial lasso peptide citrocin. J Biol Chem. 2019;294(17):6822–6830. PMCID: PMC6497930
    Reference Link
  • 1.
    Piscotta F, Jeffrey P, Link J. ParST is a widespread toxin-antitoxin module that targets nucleotide metabolism. Proc Natl Acad Sci U S A. 2019;116(3):826–834. PMCID: PMC6338849
    Reference Link
  • 1.
    Chou W, Brynildsen M. Loss of DksA leads to multi-faceted impairment of nitric oxide detoxification by Escherichia coli. Free Radic Biol Med. 2019;130:288–296. PMID: 30366060
    Reference Link
  • 1.
    Mitchell A, Srikumar T, Silhavy T. Cyclic Enterobacterial Common Antigen Maintains the Outer Membrane Permeability Barrier of Escherichia coli in a Manner Controlled by YhdP. mBio. 2018;9(4). PMCID: PMC6083912
    Reference Link
  • 1.
    Bratton B, Shaevitz J, Gitai Z, Morgenstein R. MreB polymers and curvature localization are enhanced by RodZ and predict E. coli’s cylindrical uniformity. Nat Commun. 2018;9(1):2797. PMCID: PMC6052060
    Reference Link
  • 1.
    Li S, Li Z, Park J, King C, Rabinowitz J, Wingreen N, Gitai Z. Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions. Nat Microbiol. 2018;3(8):939–947. PMCID: PMC6278830
    Reference Link
  • 1.
    Mok W, Brynildsen M. Timing of DNA damage responses impacts persistence to fluoroquinolones. Proc Natl Acad Sci U S A. 2018;115(27):E6301-E6309. PMCID: PMC6142227
    Reference Link
  • 1.
    Konovalova A, Grabowicz M, Balibar C, Malinverni J, Painter R, Riley D, Mann P, Wang H, Garlisi C, Sherborne B, Rigel N, Ricci D, Black T, Roemer T, Silhavy T, Walker S. Inhibitor of intramembrane protease RseP blocks the σ response causing lethal accumulation of unfolded outer membrane proteins. Proc Natl Acad Sci U S A. 2018;115(28):E6614-E6621. PMCID: PMC6048503
    Reference Link
  • 1.
    Kobayashi N, Inano K, Sasahara K, Sato T, Miyazawa K, Fukuma T, Hecht M, Song C, Murata K, Arai R. Self-Assembling Supramolecular Nanostructures Constructed from de Novo Extender Protein Nanobuilding Blocks. ACS Synth Biol. 2018;7(5):1381–1394. PMID: 29690759
    Reference Link

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