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Embryo, Nonmammalian

  • 1.
    Treen N, Chavarria E, Weaver C, Brangwynne C, Levine M. An FGF timer for zygotic genome activation. Genes Dev. 2023;37(3-4):80–85. PMCID: PMC10069452
    Reference Link
  • 1.
    Ing-Simmons E, Vaid R, Bing X, Levine M, Mannervik M, Vaquerizas J. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat Genet. 2021;53(4):487–499. PMCID: PMC8035076
    Reference Link
  • 1.
    Treen N, Shimobayashi S, Eeftens J, Brangwynne C, Levine M. Properties of repression condensates in living Ciona embryos. Nat Commun. 2021;12(1):1561. PMCID: PMC7946874
    Reference Link
  • 1.
    Colonnetta M, Lym L, Wilkins L, Kappes G, Castro E, Ryder P, Schedl P, Lerit D, Deshpande G. Antagonism between and Torso receptor regulates transcriptional quiescence underlying germline/soma distinction. Elife. 2021;10. PMCID: PMC7843132
    Reference Link
  • 1.
    Falahati H, Hur W, Di Talia S, Wieschaus E. Temperature-Induced uncoupling of cell cycle regulators. Dev Biol. 2021;470:147–153. PMCID: PMC8106975
    Reference Link
  • 1.
    Stern T, Shvartsman S, Wieschaus E. Template-based mapping of dynamic motifs in tissue morphogenesis. PLoS Comput Biol. 2020;16(8):e1008049. PMCID: PMC7442231
    Reference Link
  • 1.
    Merkle J, Wittes J, Schüpbach T. Signaling between somatic follicle cells and the germline patterns the egg and embryo of Drosophila. Curr Top Dev Biol. 2020;140:55–86. PMID: 32591083
    Reference Link
  • 1.
    Cao W, Kabelitz S, Gupta M, Yeung E, Lin S, Rammelt C, Ihling C, Pekovic F, Low T, Siddiqui N, Cheng M, Angers S, Smibert C, Wühr M, Wahle E, Lipshitz H. Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic Transition. Cell Rep. 2020;31(12):107783. PMCID: PMC7372737
    Reference Link
  • 1.
    Song Y, Shvartsman S. Chemical Embryology Redux: Metabolic Control of Development. Trends Genet. 2020;36(8):577–586. PMID: 32532533
    Reference Link
  • 1.
    Ueberschär M, Wang H, Zhang C, Kondo S, Aoki T, Schedl P, Lai E, Wen J, Dai Q. BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila. Nat Commun. 2019;10(1):5700. PMCID: PMC6911014
    Reference Link
  • 1.
    Dutta S, Djabrayan N, Smits C, Rowley C, Shvartsman S. Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo. Biophys J. 2020;118(10):2349–2353. PMCID: PMC7231883
    Reference Link
  • 1.
    Smits C, Shvartsman S. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020;137:193–217. PMID: 32143743
    Reference Link
  • 1.
    Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman S, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020;31(4):235–243. PMCID: PMC7183763
    Reference Link
  • 1.
    Schüpbach T. Genetic Screens to Analyze Pattern Formation of Egg and Embryo in : A Personal History. Annu Rev Genet. 2019;53:1–18. PMID: 31794267
    Reference Link
  • 1.
    Eichler C, Hakes A, Hull B, Gavis E. Compartmentalized degradation in the germ plasm safeguards germline development. Elife. 2020;9. PMCID: PMC6986870
    Reference Link
  • 1.
    Song Y, Park J, Tanner L, Nagano Y, Rabinowitz J, Shvartsman S. Energy budget of Drosophila embryogenesis. Curr Biol. 2019;29(12):R566-R567. PMCID: PMC9665180
    Reference Link
  • 1.
    Nguyen T, Mitchison T, Wühr M. Immunofluorescence of Microtubule Assemblies in Amphibian Oocytes and Early Embryos. Methods Mol Biol. 2019;1920:17–32. PMCID: PMC6582944
    Reference Link
  • 1.
    Hashimoto Y, Kinoshita N, Greco T, Federspiel J, Beltran P, Ueno N, Cristea I. Mechanical Force Induces Phosphorylation-Mediated Signaling that Underlies Tissue Response and Robustness in Xenopus Embryos. Cell Syst. 2019;8(3):226–241.e7. PMCID: PMC6453581
    Reference Link
  • 1.
    Johnson H, Toettcher J. Signaling Dynamics Control Cell Fate in the Early Drosophila Embryo. Dev Cell. 2019;48(3):361–370.e3. PMCID: PMC6394837
    Reference Link
  • 1.
    Petkova M, Tkačik G, Bialek W, Wieschaus E, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 2019;176(4):844–855.e15. PMCID: PMC6526179
    Reference Link
  • 1.
    Zoller B, Little S, Gregor T. Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting. Cell. 2018;175(3):835–847.e25. PMCID: PMC6779125
    Reference Link
  • 1.
    Gupta M, Sonnett M, Ryazanova L, Presler M, Wühr M. Quantitative Proteomics of Xenopus Embryos I, Sample Preparation. Methods Mol Biol. 2018;1865:175–194. PMCID: PMC6564683
    Reference Link
  • 1.
    Sonnett M, Gupta M, Nguyen T, Wühr M. Quantitative Proteomics for Xenopus Embryos II, Data Analysis. Methods Mol Biol. 2018;1865:195–215. PMCID: PMC6534117
    Reference Link
  • 1.
    Kachaev Z, Lebedeva L, Kozlov E, Toropygin I, Schedl P, Shidlovskii Y. Paip2 is localized to active promoters and loaded onto nascent mRNA in Drosophila. Cell Cycle. 2018;17(14):1708–1720. PMCID: PMC6133343
    Reference Link
  • 1.
    Niepielko M, Eagle W, Gavis E. Stochastic Seeding Coupled with mRNA Self-Recruitment Generates Heterogeneous Drosophila Germ Granules. Curr Biol. 2018;28(12):1872–1881.e3. PMCID: PMC6008217
    Reference Link
  • 1.
    Harris A, Siggers P, Corrochano S, Warr N, Sagar D, Grimes D, Suzuki M, Burdine R, Cong F, Koo B-K, Clevers H, Stévant I, Nef S, Wells S, Brauner R, Ben Rhouma B, Belguith N, Eozenou C, Bignon-Topalovic J, Bashamboo A, McElreavey K, Greenfield A. ZNRF3 functions in mammalian sex determination by inhibiting canonical WNT signaling. Proc Natl Acad Sci U S A. 2018;115(21):5474–5479. PMCID: PMC6003506
    Reference Link
  • 1.
    Pierre A, Sallé J, Wühr M, Minc N. Generic Theoretical Models to Predict Division Patterns of Cleaving Embryos. Dev Cell. 2016;39(6):667–682. PMCID: PMC5180451
    Reference Link
  • 1.
    Cardoso M, Fontenele M, Lim B, Bisch P, Shvartsman S, Araujo H. A novel function for the IκB inhibitor Cactus in promoting Dorsal nuclear localization and activity in the embryo. Development. 2017;144(16):2907–2913. PMCID: PMC5592809
    Reference Link
  • 1.
    Little S, Gregor T. Single mRNA Molecule Detection in Drosophila. Methods Mol Biol. 2018;1649:127–142. PMCID: PMC5772605
    Reference Link
  • 1.
    Garcia H, Gregor T. Live Imaging of mRNA Synthesis in Drosophila. Methods Mol Biol. 2018;1649:349–357. PMCID: PMC5909709
    Reference Link
  • 1.
    Mattingly H, Sheintuch M, Shvartsman S. The Design Space of the Embryonic Cell Cycle Oscillator. Biophys J. 2017;113(3):743–752. PMCID: PMC5550316
    Reference Link
  • 1.
    Goyal Y, Levario T, Mattingly H, Holmes S, Shvartsman S, Lu H. Parallel imaging of embryos for quantitative analysis of genetic perturbations of the Ras pathway. Dis Model Mech. 2017;10(7):923–929. PMCID: PMC5536913
    Reference Link
  • 1.
    Rogers W, Goyal Y, Yamaya K, Shvartsman S, Levine M. Uncoupling neurogenic gene networks in the embryo. Genes Dev. 2017;31(7):634–638. PMCID: PMC5411704
    Reference Link
  • 1.
    Deshpande G, Barr J, Gerlitz O, Lebedeva L, Shidlovskii Y ii, Schedl P. Cells on the move: Modulation of guidance cues during germ cell migration. Fly (Austin). 2017;11(3):200–207. PMCID: PMC5552272
    Reference Link
  • 1.
    Lim B, Dsilva C, Kevrekidis I, Shvartsman S. Reconstructing ERK Signaling in the Drosophila Embryo from Fixed Images. Methods Mol Biol. 2017;1487:337–351. PMCID: PMC6557116
    Reference Link
  • 1.
    Deshpande G, Manry D, Jourjine N, Mogila V, Mozes H, Bialistoky T, Gerlitz O, Schedl P. Role of the ABC transporter Mdr49 in Hedgehog signaling and germ cell migration. Development. 2016;143(12):2111–20. PMCID: PMC4920174
    Reference Link
  • 1.
    Doubrovinski K, Swan M, Polyakov O, Wieschaus E. Measurement of cortical elasticity in Drosophila melanogaster embryos using ferrofluids. Proc Natl Acad Sci U S A. 2017;114(5):1051–1056. PMCID: PMC5293093
    Reference Link
  • 1.
    Lerit D, Shebelut C, Lawlor K, Rusan N, Gavis E, Schedl P, Deshpande G. Germ Cell-less Promotes Centrosome Segregation to Induce Germ Cell Formation. Cell Rep. 2017;18(4):831–839. PMCID: PMC5327791
    Reference Link
  • 1.
    Blythe S, Wieschaus E. Establishment and maintenance of heritable chromatin structure during early embryogenesis. Elife. 2016;5. PMCID: PMC5156528
    Reference Link
  • 1.
    He B, Martin A, Wieschaus E. Flow-dependent myosin recruitment during Drosophila cellularization requires zygotic dunk activity. Development. 2016;143(13):2417–30. PMCID: PMC4958320
    Reference Link
  • 1.
    Wieschaus E. Positional Information and Cell Fate Determination in the Early Drosophila Embryo. Curr Top Dev Biol. 2016;117:567–79. PMID: 26970001
    Reference Link
  • 1.
    Fukaya T, Lim B, Levine M. Enhancer Control of Transcriptional Bursting. Cell. 2016;166(2):358–368. PMCID: PMC4970759
    Reference Link
  • 1.
    Momen-Roknabadi A, Di Talia S, Wieschaus E. Transcriptional Timers Regulating Mitosis in Early Drosophila Embryos. Cell Rep. 2016;16(11):2793–2801. PMCID: PMC5386176
    Reference Link
  • 1.
    Levario T, Zhao C, Rouse T, Shvartsman S, Lu H. An integrated platform for large-scale data collection and precise perturbation of live Drosophila embryos. Sci Rep. 2016;6:21366. PMCID: PMC4750044
    Reference Link
  • 1.
    Bothma J, Garcia H, Esposito E, Schlissel G, Gregor T, Levine M. Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos. Proc Natl Acad Sci U S A. 2014;111(29):10598–603. PMCID: PMC4115566
    Reference Link
  • 1.
    Haupaix N, Abitua P, Sirour C, Yasuo H, Levine M, Hudson C. Ephrin-mediated restriction of ERK1/2 activity delimits the number of pigment cells in the Ciona CNS. Dev Biol. 2014;394(1):170–80. PMCID: PMC4258108
    Reference Link
  • 1.
    Deshpande G, Nouri A, Schedl P. Wnt Signaling in Sexual Dimorphism. Genetics. 2016;202(2):661–73. PMCID: PMC4788241
    Reference Link
  • 1.
    Barr J, Yakovlev K, Shidlovskii Y ii, Schedl P. Establishing and maintaining cell polarity with mRNA localization in Drosophila. Bioessays. 2016;38(3):244–53. PMCID: PMC4871591
    Reference Link
  • 1.
    Fujioka M, Mistry H, Schedl P, Jaynes J. Determinants of Chromosome Architecture: Insulator Pairing in cis and in trans. PLoS Genet. 2016;12(2):e1005889. PMCID: PMC4765946
    Reference Link
  • 1.
    Lim B, Dsilva C, Levario T, Lu H, Schüpbach T, Kevrekidis I, Shvartsman S. Dynamics of Inductive ERK Signaling in the Drosophila Embryo. Curr Biol. 2015;25(13):1784–90. PMCID: PMC4675133
    Reference Link

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