Colonnetta M, Schedl P, Deshpande G. Germline/soma distinction in embryos requires regulators of zygotic genome activation. Elife. 2023;12. PMCID: PMC9812407

Li H, Gavis E. Drosophila FMRP controls miR-276-mediated regulation of nejire mRNA for space-filling dendrite development. G3 (Bethesda). 2022;12(11). PMCID: PMC9635640

Ibragimov A, Bylino O, Kyrchanova O, Shidlovskii Y, White R, Schedl P, Georgiev P. The Variable CTCF Site from Drosophila melanogaster Ubx Gene is Redundant and Has no Insulator Activity. Dokl Biochem Biophys. 2022;505(1):173–175. PMCID: PMC9613721

Voortman L, Anderson C, Urban E, Yuan L, Tran S, Neuhaus-Follini A, Derrick J, Gregor T, Johnston R. Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in flies. Dev Cell. 2022;57(15):1817–1832.e5. PMCID: PMC9378680

Devenport D. A squash and a squeeze. Elife. 2022;11. PMCID: PMC9246364

Seyboldt R, Lavoie J, Henry A, Vanaret J, Petkova M, Gregor T, François P. Latent space of a small genetic network: Geometry of dynamics and information. Proc Natl Acad Sci U S A. 2022;119(26):e2113651119. PMCID: PMC9245618

Peng Y, Gavis E. The Drosophila hnRNP F/H homolog Glorund recruits dFMRP to inhibit nanos translation elongation. Nucleic Acids Res. 2022;50(12):7067–7083. PMCID: PMC9262583

Li H, Gavis E. The Drosophila fragile X mental retardation protein modulates the neuronal cytoskeleton to limit dendritic arborization. Development. 2022;149(10). PMID: 35502752

Levo M, Raimundo J, Bing X, Sisco Z, Batut P, Ryabichko S, Gregor T, Levine M. Transcriptional coupling of distant regulatory genes in living embryos. Nature. 2022;605(7911):754–760. PMCID: PMC9886134

Valentino M, Ortega B, Ulrich B, Doyle D, Farnum E, Joiner D, Gavis E, Niepielko M. Computational modeling offers new insight into Drosophila germ granule development. Biophys J. 2022;121(8):1465–1482. PMCID: PMC9072583

Stern T, Shvartsman S, Wieschaus E. Deconstructing gastrulation at single-cell resolution. Curr Biol. 2022;32(8):1861–1868.e7. PMCID: PMC9221752

Overman K, Choi D, Leung K, Shaevitz J, Berman G. Measuring the repertoire of age-related behavioral changes in Drosophila melanogaster. PLoS Comput Biol. 2022;18(2):e1009867. PMCID: PMC8903287

Greco T, Secker C, Ramos E, Federspiel J, Liu J-P, Perez A, Al-Ramahi I, Cantle J, Carroll J, Botas J, Zeitlin S, Wanker E, Cristea I. Dynamics of huntingtin protein interactions in the striatum identifies candidate modifiers of Huntington disease. Cell Syst. 2022;13(4):304–320.e5. PMCID: PMC9317655

Batut P, Bing X, Sisco Z, Raimundo J, Levo M, Levine M. Genome organization controls transcriptional dynamics during development. Science. 2022;375(6580):566–570. PMID: 35113722

Doherty C, Amargant F, Shvartsman S, Duncan F, Gavis E. Bidirectional communication in oogenesis: a dynamic conversation in mice and Drosophila. Trends Cell Biol. 2022;32(4):311–323. PMCID: PMC8917990

Huang S-K, Whitney P, Dutta S, Shvartsman S, Rushlow C. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021;31(22):5102–5110.e5. PMCID: PMC8612988

Parkhitko A, Wang L, Filine E, Jouandin P, Leshchiner D, Binari R, Asara J, Rabinowitz J, Perrimon N. A genetic model of methionine restriction extends health- and lifespan. Proc Natl Acad Sci U S A. 2021;118(40). PMCID: PMC8501845

Zung J, McBride C. How a fly came to love the vomit fruit. Nature. 2020;579(7799):345–346. PMCID: 3409263

Zhao Z, McBride C. Evolution of olfactory circuits in insects. J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2020;206(3):353–367. PMCID: PMC7192870

Gilmutdinov R, Kozlov E, Yakovlev K, Olenina L, Kotov A, Barr J, Zhukova M, Schedl P, Shidlovskii Y. The 3’UTR of the Drosophila CPEB translation factor gene orb2 plays a crucial role in spermatogenesis. Development. 2021;148(17). PMCID: PMC8513165

Patel A, Zhang L, Keenan S, Rushlow C, Fradin C, Shvartsman S. Capicua is a fast-acting transcriptional brake. Curr Biol. 2021;31(16):3639–3647.e5. PMCID: PMC8612007

Shao B, Diegmiller R, Shvartsman S. Collective oscillations of coupled cell cycles. Biophys J. 2021;120(19):4242–4251. PMCID: PMC8516640

Erokhin M, Gorbenko F, Lomaev D, Mazina M, Mikhailova A, Garaev A, Parshikov A, Vorobyeva N, Georgiev P, Schedl P, Chetverina D. Boundaries potentiate polycomb response element-mediated silencing. BMC Biol. 2021;19(1):113. PMCID: PMC8170967

Diegmiller R, Zhang L, Gameiro M, Barr J, Alsous J, Schedl P, Shvartsman S, Mischaikow K. Mapping parameter spaces of biological switches. PLoS Comput Biol. 2021;17(2):e1008711. PMCID: PMC7895388

Chetverina D, Erokhin M, Schedl P. GAGA factor: a multifunctional pioneering chromatin protein. Cell Mol Life Sci. 2021;78(9):4125–4141. PMCID: PMC8815297

Stern T, Shvartsman S, Wieschaus E. Template-based mapping of dynamic motifs in tissue morphogenesis. PLoS Comput Biol. 2020;16(8):e1008049. PMCID: PMC7442231

Merkle J, Wittes J, Schüpbach T. Signaling between somatic follicle cells and the germline patterns the egg and embryo of Drosophila. Curr Top Dev Biol. 2020;140:55–86. PMID: 32591083

Song Y, Shvartsman S. Chemical Embryology Redux: Metabolic Control of Development. Trends Genet. 2020;36(8):577–586. PMID: 32532533

Kyrchanova O, Maksimenko O, Ibragimov A, Sokolov V, Postika N, Lukyanova M, Schedl P, Georgiev P. The insulator functions of the polydactyl C2H2 zinc finger protein CTCF: Necessity versus sufficiency. Sci Adv. 2020;6(13):eaaz3152. PMCID: PMC7096168

Dutta S, Djabrayan N, Smits C, Rowley C, Shvartsman S. Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo. Biophys J. 2020;118(10):2349–2353. PMCID: PMC7231883

Patel A, Yeung E, McGuire S, Wu A, Toettcher J, Burdine R, Shvartsman S. Optimizing photoswitchable MEK. Proc Natl Acad Sci U S A. 2019;116(51):25756–25763. PMCID: PMC6926043

Zhou J, Schor I, Yao V, Theesfeld C, Marco-Ferreres R, Tadych A, Furlong E, Troyanskaya O. Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. PLoS Genet. 2019;15(9):e1008382. PMCID: PMC6779412

Kyrchanova O, Sabirov M, Mogila V, Kurbidaeva A, Postika N, Maksimenko O, Schedl P, Georgiev P. Complete reconstitution of bypass and blocking functions in a minimal artificial insulator from complex. Proc Natl Acad Sci U S A. 2019;116(27):13462–13467. PMCID: PMC6613175

Shvartsman S, Krajnc M. Nuclear (Bio)physics in the Embryo. Cell. 2019;177(4):799–801. PMID: 31051102

Baker C, Clemens J, Murthy M. Acoustic Pattern Recognition and Courtship Songs: Insights from Insects. Annu Rev Neurosci. 2019;42:129–147. PMCID: PMC6885008

Johnson H, Toettcher J. Signaling Dynamics Control Cell Fate in the Early Drosophila Embryo. Dev Cell. 2019;48(3):361–370.e3. PMCID: PMC6394837

Fedotova A, Clendinen C, Bonchuk A, Mogila V, Aoki T, Georgiev P, Schedl P. Functional dissection of the developmentally restricted BEN domain chromatin boundary factor Insensitive. Epigenetics Chromatin. 2019;12(1):2. PMCID: PMC6317261

Kyrchanova O, Kurbidaeva A, Sabirov M, Postika N, Wolle D, Aoki T, Maksimenko O, Mogila V, Schedl P, Georgiev P. The bithorax complex iab-7 Polycomb response element has a novel role in the functioning of the Fab-7 chromatin boundary. PLoS Genet. 2018;14(8):e1007442. PMCID: PMC6110506

Goyal Y, Schüpbach T, Shvartsman S. A quantitative model of developmental RTK signaling. Dev Biol. 2018;442(1):80–86. PMCID: PMC6501586

Fedotova A, Aoki T, Rossier M, Mishra R, Clendinen C, Kyrchanova O, Wolle D, Bonchuk A, Maeda R, Mutero A, Cleard F, Mogila V, Karch F, Georgiev P, Schedl P. The BEN Domain Protein Insensitive Binds to the Chromatin Boundary To Establish Proper Segmental Identity in . Genetics. 2018;210(2):573–585. PMCID: PMC6216583

Chen H, Levo M, Barinov L, Fujioka M, Jaynes J, Gregor T. Dynamic interplay between enhancer-promoter topology and gene activity. Nat Genet. 2018;50(9):1296–1303. PMCID: PMC6119122

Aguilera-Gomez A, Zacharogianni M, van Oorschot M, Genau H, Grond R, Veenendaal T, Sinsimer K, Gavis E, Behrends C, Rabouille C. Phospho-Rasputin Stabilization by Sec16 Is Required for Stress Granule Formation upon Amino Acid Starvation. Cell Rep. 2017;20(4):935–948. PMCID: PMC6064189

Streichan S, Lefebvre M, Noll N, Wieschaus E, Shraiman B. Global morphogenetic flow is accurately predicted by the spatial distribution of myosin motors. Elife. 2018;7. PMCID: PMC5843464

Clemens J, Ozeri-Engelhard N, Murthy M. Fast intensity adaptation enhances the encoding of sound in Drosophila. Nat Commun. 2018;9(1):134. PMCID: PMC5760620

Cardoso M, Fontenele M, Lim B, Bisch P, Shvartsman S, Araujo H. A novel function for the IκB inhibitor Cactus in promoting Dorsal nuclear localization and activity in the embryo. Development. 2017;144(16):2907–2913. PMCID: PMC5592809

Hannon C, Blythe S, Wieschaus E. Concentration dependent chromatin states induced by the bicoid morphogen gradient. Elife. 2017;6. PMCID: PMC5624782

Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis I, Singer A, Shvartsman S. Synthesizing developmental trajectories. PLoS Comput Biol. 2017;13(9):e1005742. PMCID: PMC5619836

Stern D, Clemens J, Coen P, Calhoun A, Hogenesch J, Arthur B, Murthy M. Experimental and statistical reevaluation provides no evidence for courtship song rhythms. Proc Natl Acad Sci U S A. 2017;114(37):9978–9983. PMCID: PMC5604024

Pereira T, Murthy M. To Fight or Not to Fight. Neuron. 2017;95(5):986–988. PMID: 28858625

Song Y, Marmion R, Park J, Biswas D, Rabinowitz J, Shvartsman S. Dynamic Control of dNTP Synthesis in Early Embryos. Dev Cell. 2017;42(3):301–308.e3. PMCID: PMC5630127