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DNA Methylation

  • 1.
    von Holdt B, Kartzinel R, van Oers K, Verhoeven K, Ouyang J. Changes in the rearing environment cause reorganization of molecular networks associated with DNA methylation. J Anim Ecol. 2023;92(3):648–664. PMID: 36567635
    Reference Link
  • 1.
    Blostein F, Fisher J, Dou J, Schneper L, Ware E, Notterman D, Mitchell C, Bakulski K. Polymethylation scores for prenatal maternal smoke exposure persist until age 15 and are detected in saliva in the Fragile Families and Child Wellbeing cohort. Epigenetics. 2022;17(13):2223–2240. PMCID: PMC9665138
    Reference Link
  • 1.
    Rubbi L, Zhang H, Feng J, He C, Kurnia P, Ratan P, Tammana A, House S, Thompson M, Farrell C, Snir S, Stahler D, Ostrander E, vonHoldt B, Pellegrini M. The effects of age, sex, weight, and breed on canid methylomes. Epigenetics. 2022;17(11):1497–1512. PMCID: PMC9586589
    Reference Link
  • 1.
    Sugiura A, Andrejeva G, Voss K, Heintzman D, Xu X, Madden M, Ye X, Beier K, Chowdhury N, Wolf M, Young A, Greenwood D, Sewell A, Shahi S, Freedman S, Cameron A, Foerch P, Bourne T, García-Cañaveras J, Karijolich J, Newcomb D, Mangalam A, Rabinowitz J, Rathmell J. MTHFD2 is a metabolic checkpoint controlling effector and regulatory T cell fate and function. Immunity. 2022;55(1):65–81.e9. PMCID: PMC8755618
    Reference Link
  • 1.
    Joyce B, Gao T, Koss K, Zheng Y, Cardenas A, Heiss J, Just A, Zhang K, van Horn L, Allen N, Greenland P, Cohen S, Gordon-Larsen P, Mitchell C, McLanahan S, Schneper L, Notterman D, Rifas-Shiman S, Oken E, Hivert M-F, Wright R, Baccarelli A, Lloyd-Jones D, Hou L. Impact of paternal education on epigenetic ageing in adolescence and mid-adulthood: a multi-cohort study in the USA and Mexico. Int J Epidemiol. 2022;51(3):870–884. PMCID: PMC9189973
    Reference Link
  • 1.
    Ruf-Zamojski F, Zhang Z, Zamojski M, Smith G, Mendelev N, Liu H, Nudelman G, Moriwaki M, Pincas H, Castanon R, Nair V, Seenarine N, Amper M, Zhou X, Ongaro L, Toufaily C, Schang G, Nery J, Bartlett A, Aldridge A, Jain N, Childs G, Troyanskaya O, Ecker J, Turgeon J, Welt C, Bernard D, Sealfon S. Single nucleus multi-omics regulatory landscape of the murine pituitary. Nat Commun. 2021;12(1):2677. PMCID: PMC8113460
    Reference Link
  • 1.
    Zhu Q, Tekpli X, Troyanskaya O, Kristensen V. Subtype-specific transcriptional regulators in breast tumors subjected to genetic and epigenetic alterations. Bioinformatics. 2020;36(4):994–999. PMCID: PMC7031777
    Reference Link
  • 1.
    McKee S, Zhang S, Chen L, Rabinowitz J, Reyes T. Perinatal high fat diet and early life methyl donor supplementation alter one carbon metabolism and DNA methylation in the brain. J Neurochem. 2018;145(5):362–373. PMCID: PMC6288810
    Reference Link
  • 1.
    Jenness C, Giunta S, Müller M, Kimura H, Muir T, Funabiki H. HELLS and CDCA7 comprise a bipartite nucleosome remodeling complex defective in ICF syndrome. Proc Natl Acad Sci U S A. 2018;115(5):E876-E885. PMCID: PMC5798369
    Reference Link
  • 1.
    Deng D, Yin P, Yan C, Pan X, Gong X, Qi S, Xie T, Mahfouz M, Zhu J-K, Yan N, Shi Y. Recognition of methylated DNA by TAL effectors. Cell Res. 2012;22(10):1502–4. PMCID: PMC3463267
    Reference Link
  • 1.
    Wang X, Paucek R, Gooding A, Brown Z, Ge E, Muir T, Cech T. Molecular analysis of PRC2 recruitment to DNA in chromatin and its inhibition by RNA. Nat Struct Mol Biol. 2017;24(12):1028–1038. PMCID: PMC5771497
    Reference Link
  • 1.
    Wooldridge A, Bischof R, Liu H, Heinemann G, Hunter D, Giles L, Simmons R, Lien Y-C, Lu W, Rabinowitz J, Kind K, Owens J, Clifton V, Gatford K. Late-gestation maternal dietary methyl donor and cofactor supplementation in sheep partially reverses protection against allergic sensitization by IUGR. Am J Physiol Regul Integr Comp Physiol. 2018;314(1):R22-R33. PMCID: PMC5866368
    Reference Link
  • 1.
    Koch I, Clark M, Thompson M, Deere-Machemer K, Wang J, Duarte L, Gnanadesikan G, McCoy E, Rubbi L, Stahler D, Pellegrini M, Ostrander E, Wayne R, Sinsheimer J, vonHoldt B. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Mol Ecol. 2016;25(8):1838–55. PMCID: PMC4849173
    Reference Link
  • 1.
    Teng X, Emmett M, Lazar M, Goldberg E, Rabinowitz J. Lactate Dehydrogenase C Produces S-2-Hydroxyglutarate in Mouse Testis. ACS Chem Biol. 2016;11(9):2420–7. PMCID: PMC5317044
    Reference Link
  • 1.
    Snir S, vonHoldt B, Pellegrini M. A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput Biol. 2016;12(11):e1005183. PMCID: PMC5106012
    Reference Link
  • 1.
    vonHoldt B, Takuno S, Gaut B. Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). Mol Biol Evol. 2012;29(10):3193–203. PMID: 22593226
    Reference Link
  • 1.
    Verhoeven K, vonHoldt B, Sork V. Epigenetics in ecology and evolution: what we know and what we need to know. Mol Ecol. 2016;25(8):1631–8. PMID: 26994410
    Reference Link
  • 1.
    Mitchell C, Schneper L, Notterman D. DNA methylation, early life environment, and health outcomes. Pediatr Res. 2016;79(1-2):212–9. PMCID: PMC4798238
    Reference Link

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