Prentice J, Bridges A, Bassler B. Synergy between c-di-GMP and Quorum-Sensing Signaling in Vibrio cholerae Biofilm Morphogenesis. J Bacteriol. 2022;204(10):e0024922. PMCID: PMC9578409

Taylor I, Jeffrey P, Moustafa D, Goldberg J, Bassler B. The PqsE Active Site as a Target for Small Molecule Antimicrobial Agents against . Biochemistry. 2022;61(17):1894–1903. PMCID: PMC9454246

Bridges A, Prentice J, Wingreen N, Bassler B. Signal Transduction Network Principles Underlying Bacterial Collective Behaviors. Annu Rev Microbiol. 2022;76:235–257. PMCID: PMC9463083

Bridges A, Prentice J, Fei C, Wingreen N, Bassler B. Quantitative input-output dynamics of a c-di-GMP signal transduction cascade in Vibrio cholerae. PLoS Biol. 2022;20(3):e3001585. PMCID: PMC8967002

Jemielita M, Mashruwala A, Valastyan J, Wingreen N, Bassler B. Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio cholerae. mBio. 2021;12(6):e0151821. PMCID: PMC8609355

Qin B, Fei C, Wang B, Stone H, Wingreen N, Bassler B. Hierarchical transitions and fractal wrinkling drive bacterial pellicle morphogenesis. Proc Natl Acad Sci U S A. 2021;118(20). PMCID: PMC8157956

Narla A, Borenstein D, Wingreen N. A biophysical limit for quorum sensing in biofilms. Proc Natl Acad Sci U S A. 2021;118(21). PMCID: PMC8166027

Bridges A, Bassler B. Inverse regulation of biofilm dispersal by polyamine signals. Elife. 2021;10. PMCID: PMC8079147

Wong G, Antani J, Lele P, Chen J, Nan B, Kühn M, Persat A, Bru J-L, Høyland-Kroghsbo N, Siryaporn A, Conrad J, Carrara F, Yawata Y, Stocker R, Brun Y, Whitfield G, Lee C, de Anda J, Schmidt W, Golestanian R, O’Toole G, Floyd K, Yildiz F, Yang S, Jin F, Toyofuku M, Eberl L, Nomura N, Zacharoff L, El-Naggar M, Yalcin S, Malvankar N, Rojas-Andrade M, Hochbaum A, Yan J, Stone H, Wingreen N, Bassler B, Wu Y, Xu H, Drescher K, Dunkel J. Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Phys Biol. 2021;18(5). PMCID: PMC8506656

Scheffler R, Sugimoto Y, Bratton B, Ellison C, Koch M, Donia M, Gitai Z. Pseudomonas aeruginosa detachment from surfaces via a self-made small molecule. J Biol Chem. 2021;296:100279. PMCID: PMC7949062

Bridges A, Fei C, Bassler B. Identification of signaling pathways, matrix-digestion enzymes, and motility components controlling biofilm dispersal. Proc Natl Acad Sci U S A. 2020;117(51):32639–32647. PMCID: PMC7768729

Mashruwala A, Bassler B. The Vibrio cholerae Quorum-Sensing Protein VqmA Integrates Cell Density, Environmental, and Host-Derived Cues into the Control of Virulence. mBio. 2020;11(4). PMCID: PMC7387800

Mukherjee S, Jemielita M, Stergioula V, Tikhonov M, Bassler B. Photosensing and quorum sensing are integrated to control Pseudomonas aeruginosa collective behaviors. PLoS Biol. 2019;17(12):e3000579. PMCID: PMC6932827

Qin B, Fei C, Bridges A, Mashruwala A, Stone H, Wingreen N, Bassler B. Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy. Science. 2020;369(6499):71–77. PMCID: PMC7426073

Fei C, Mao S, Yan J, Alert R, Stone H, Bassler B, Wingreen N, Košmrlj A. Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates. Proc Natl Acad Sci U S A. 2020;117(14):7622–7632. PMCID: PMC7148565

Bridges A, Bassler B. The intragenus and interspecies quorum-sensing autoinducers exert distinct control over Vibrio cholerae biofilm formation and dispersal. PLoS Biol. 2019;17(11):e3000429. PMCID: PMC6872173

Silpe J, Bassler B. A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision. Cell. 2019;176(1-2):268–280.e13. PMCID: PMC6329655

Yan J, Bassler B. Surviving as a Community: Antibiotic Tolerance and Persistence in Bacterial Biofilms. Cell Host Microbe. 2019;26(1):15–21. PMCID: PMC6629468

Sanfilippo J, Lorestani A, Koch M, Bratton B, Siryaporn A, Stone H, Gitai Z. Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing. Nat Microbiol. 2019;4(8):1274–1281. PMCID: PMC6656604

Mukherjee S, Bassler B. Bacterial quorum sensing in complex and dynamically changing environments. Nat Rev Microbiol. 2019;17(6):371–382. PMCID: PMC6615036

Yan J, Fei C, Mao S, Moreau A, Wingreen N, Košmrlj A, Stone H, Bassler B. Mechanical instability and interfacial energy drive biofilm morphogenesis. Elife. 2019;8. PMCID: PMC6453567

Yan J, Moreau A, Khodaparast S, Perazzo A, Feng J, Fei C, Mao S, Mukherjee S, Košmrlj A, Wingreen N, Bassler B, Stone H. Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling. Adv Mater. 2018;30(46):e1804153. PMCID: PMC8865467

Mukherjee S, Moustafa D, Stergioula V, Smith C, Goldberg J, Bassler B. The PqsE and RhlR proteins are an autoinducer synthase-receptor pair that control virulence and biofilm development in . Proc Natl Acad Sci U S A. 2018;115(40):E9411-E9418. PMCID: PMC6176596

Kannan A, Yang Z, Kim M, Stone H, Siryaporn A. Dynamic switching enables efficient bacterial colonization in flow. Proc Natl Acad Sci U S A. 2018;115(21):5438–5443. PMCID: PMC6003447

Mao D, Bushin L, Moon K, Wu Y, Seyedsayamdost M. Discovery of as a global regulator of secondary metabolism and virulence in E264. Proc Natl Acad Sci U S A. 2017;114(14):E2920-E2928. PMCID: PMC5389298

Yan J, Nadell C, Stone H, Wingreen N, Bassler B. Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion. Nat Commun. 2017;8(1):327. PMCID: PMC5569112

Mukherjee S, Moustafa D, Smith C, Goldberg J, Bassler B. The RhlR quorum-sensing receptor controls Pseudomonas aeruginosa pathogenesis and biofilm development independently of its canonical homoserine lactone autoinducer. PLoS Pathog. 2017;13(7):e1006504. PMCID: PMC5531660

Sabass B, Koch M, Liu G, Stone H, Shaevitz J. Force generation by groups of migrating bacteria. Proc Natl Acad Sci U S A. 2017;114(28):7266–7271. PMCID: PMC5514709

Kim M, Zhao A, Wang A, Brown Z, Muir T, Stone H, Bassler B. Surface-attached molecules control Staphylococcus aureus quorum sensing and biofilm development. Nat Microbiol. 2017;2:17080. PMCID: PMC5526357

Yan J, Nadell C, Bassler B. Environmental fluctuation governs selection for plasticity in biofilm production. ISME J. 2017;11(7):1569–1577. PMCID: PMC5520152

Papenfort K, Silpe J, Schramma K, Cong J-P, Seyedsayamdost M, Bassler B. A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation. Nat Chem Biol. 2017;13(5):551–557. PMCID: PMC5391282

Paczkowski J, Mukherjee S, McCready A, Cong J-P, Aquino C, Kim H, Henke B, Smith C, Bassler B. Flavonoids Suppress Virulence through Allosteric Inhibition of Quorum-sensing Receptors. J Biol Chem. 2017;292(10):4064–4076. PMCID: PMC5354481

Nadell C, Ricaurte D, Yan J, Drescher K, Bassler B. Flow environment and matrix structure interact to determine spatial competition in biofilms. Elife. 2017;6. PMCID: PMC5283829

Kim M, Ingremeau F, Zhao A, Bassler B, Stone H. Local and global consequences of flow on bacterial quorum sensing. Nat Microbiol. 2016;1:15005. PMCID: PMC5010089

Yan J, Sharo A, Stone H, Wingreen N, Bassler B. Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging. Proc Natl Acad Sci U S A. 2016;113(36):E5337–43. PMCID: PMC5018804

Orman M, Brynildsen M. Persister formation in Escherichia coli can be inhibited by treatment with nitric oxide. Free Radic Biol Med. 2016;93:145–54. PMCID: PMC4898466

Henry T, Brynildsen M. Quantifying Current Events Identifies a Novel Endurance Regulator. Trends Microbiol. 2016;24(5):324–326. PMCID: PMC4841710

Federle M, Bassler B. Interspecies communication in bacteria. J Clin Invest. 2003;112(9):1291–9. PMCID: PMC228483

Hammer B, Bassler B. Quorum sensing controls biofilm formation in Vibrio cholerae. Mol Microbiol. 2003;50(1):101–4. PMID: 14507367

Camilli A, Bassler B. Bacterial small-molecule signaling pathways. Science. 2006;311(5764):1113–6. PMCID: PMC2776824

Waters C, Lu W, Rabinowitz J, Bassler B. Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT. J Bacteriol. 2008;190(7):2527–36. PMCID: PMC2293178

Nadell C, Bassler B, Levin S. Observing bacteria through the lens of social evolution. J Biol. 2008;7(7):27. PMCID: PMC2776406

Hammer B, Bassler B. Distinct sensory pathways in Vibrio cholerae El Tor and classical biotypes modulate cyclic dimeric GMP levels to control biofilm formation. J Bacteriol. 2009;191(1):169–77. PMCID: PMC2612459

Chen G, Swem L, Swem D, Stauff D, O’Loughlin C, Jeffrey P, Bassler B, Hughson F. A strategy for antagonizing quorum sensing. Mol Cell. 2011;42(2):199–209. PMCID: PMC3092643

Ng W-L, Perez L, Cong J, Semmelhack M, Bassler B. Broad spectrum pro-quorum-sensing molecules as inhibitors of virulence in vibrios. PLoS Pathog. 2012;8(6):e1002767. PMCID: PMC3386246

Nadell C, Bucci V, Drescher K, Levin S, Bassler B, Xavier J. Cutting through the complexity of cell collectives. Proc Biol Sci. 2013;280(1755):20122770. PMCID: PMC3574390

Drescher K, Shen Y, Bassler B, Stone H. Biofilm streamers cause catastrophic disruption of flow with consequences for environmental and medical systems. Proc Natl Acad Sci U S A. 2013;110(11):4345–50. PMCID: PMC3600445

O’Loughlin C, Miller L, Siryaporn A, Drescher K, Semmelhack M, Bassler B. A quorum-sensing inhibitor blocks Pseudomonas aeruginosa virulence and biofilm formation. Proc Natl Acad Sci U S A. 2013;110(44):17981–6. PMCID: PMC3816427

Drescher K, Nadell C, Stone H, Wingreen N, Bassler B. Solutions to the public goods dilemma in bacterial biofilms. Curr Biol. 2014;24(1):50–55. PMCID: PMC3935403

Schluter J, Nadell C, Bassler B, Foster K. Adhesion as a weapon in microbial competition. ISME J. 2015;9(1):139–49. PMCID: PMC4268496