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Base Sequence

  • 1.
    Horie R, Hazbun A, Chen K, Cao C, Levine M, Horie T. Shared evolutionary origin of vertebrate neural crest and cranial placodes. Nature. 2018;560(7717):228–232. PMCID: PMC6390964
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    Cho S, Lee G, Pickering B, Jang C, Park J, He L, Mathur L, Kim S-S, Jung S, Tang H-W, Monette S, Rabinowitz J, Perrimon N, Jaffrey S, Blenis J. mTORC1 promotes cell growth via mA-dependent mRNA degradation. Mol Cell. 2021;81(10):2064–2075.e8. PMCID: PMC8356906
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  • 1.
    Arguello E, Leach R, Kleiner R. Selection with a Site-Specifically Modified RNA Library Reveals the Binding Preferences of N-Methyladenosine Reader Proteins. Biochemistry. 2019;58(31):3386–3395. PMCID: PMC6684389
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  • 1.
    Fröhlich K, Förstner K, Gitai Z. Post-transcriptional gene regulation by an Hfq-independent small RNA in Caulobacter crescentus. Nucleic Acids Res. 2018;46(20):10969–10982. PMCID: PMC6237742
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    Sigoillot F, Lyman S, Huckins J, Adamson B, Chung E, Quattrochi B, King R. A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens. Nat Methods. 2012;9(4):363–6. PMCID: PMC3482495
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  • 1.
    Ding Q, Nimgaonkar I, Archer N, Bram Y, Heller B, Schwartz R, Ploss A. Identification of the Intragenomic Promoter Controlling Hepatitis E Virus Subgenomic RNA Transcription. mBio. 2018;9(3). PMCID: PMC5941075
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    Szwajkajzer D, Dai L, Fukayama J, Abramczyk B, Fairman R, Carey J. Quantitative analysis of DNA binding by the Escherichia coli arginine repressor. J Mol Biol. 2001;312(5):949–62. PMID: 11580241
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    Deng D, Yan C, Pan X, Mahfouz M, Wang J, Zhu J-K, Shi Y, Yan N. Structural basis for sequence-specific recognition of DNA by TAL effectors. Science. 2012;335(6069):720–3. PMCID: PMC3586824
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    Deng D, Yin P, Yan C, Pan X, Gong X, Qi S, Xie T, Mahfouz M, Zhu J-K, Yan N, Shi Y. Recognition of methylated DNA by TAL effectors. Cell Res. 2012;22(10):1502–4. PMCID: PMC3463267
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    Yin P, Deng D, Yan C, Pan X, Xi J, Yan N, Shi Y. Specific DNA-RNA hybrid recognition by TAL effectors. Cell Rep. 2012;2(4):707–13. PMID: 23022487
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  • 1.
    Madej G, Sun L, Yan N, Kaback R. Functional architecture of MFS D-glucose transporters. Proc Natl Acad Sci U S A. 2014;111(7):E719–27. PMCID: PMC3932877
    Reference Link
  • 1.
    Webb C, Zakian V. Telomerase RNA is more than a DNA template. RNA Biol. 2016;13(8):683–9. PMCID: PMC4993324
    Reference Link
  • 1.
    Santos J, Josling G, Ross P, Joshi P, Orchard L, Campbell T, Schieler A, Cristea I, Llinás M. Red Blood Cell Invasion by the Malaria Parasite Is Coordinated by the PfAP2-I Transcription Factor. Cell Host Microbe. 2017;21(6):731–741.e10. PMCID: PMC5855115
    Reference Link
  • 1.
    Papazyan R, Sun Z, Kim Y, Titchenell P, Hill D, Lu W, Damle M, Wan M, Zhang Y, Briggs E, Rabinowitz J, Lazar M. Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP/SREBP. Cell Metab. 2016;24(6):863–874. PMCID: PMC5159233
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  • 1.
    DeGennaro M, McBride C, Seeholzer L, Nakagawa T, Dennis E, Goldman C, Jasinskiene N, James A, Vosshall L. orco mutant mosquitoes lose strong preference for humans and are not repelled by volatile DEET. Nature. 2013;498(7455):487–91. PMCID: PMC3696029
    Reference Link
  • 1.
    Matthews B, McBride C, DeGennaro M, Despo O, Vosshall L. The neurotranscriptome of the Aedes aegypti mosquito. BMC Genomics. 2016;17:32. PMCID: PMC4704297
    Reference Link
  • 1.
    Hoegler K, Hecht M. A de novo protein confers copper resistance in Escherichia coli. Protein Sci. 2016;25(7):1249–59. PMCID: PMC4918413
    Reference Link
  • 1.
    Kwan J, Tianero M, Donia M, Wyche T, Bugni T, Schmidt E. Host control of symbiont natural product chemistry in cryptic populations of the tunicate Lissoclinum patella. PLoS One. 2014;9(5):e95850. PMCID: PMC4008419
    Reference Link
  • 1.
    Donovan J, Dufner M, Korennykh A. Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1. Proc Natl Acad Sci U S A. 2013;110(5):1652–7. PMCID: PMC3562804
    Reference Link
  • 1.
    Oktaba K, Zhang W, Lotz T, Jun D, Lemke S, Ng S, Esposito E, Levine M, Hilgers V. ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system. Mol Cell. 2015;57(2):341–8. PMCID: PMC4304968
    Reference Link
  • 1.
    Webb C, Zakian V. Telomerase RNA stem terminus element affects template boundary element function, telomere sequence, and shelterin binding. Proc Natl Acad Sci U S A. 2015;112(36):11312–7. PMCID: PMC4568702
    Reference Link
  • 1.
    Bassler B, Wright M, Showalter R, Silverman M. Intercellular signalling in Vibrio harveyi: sequence and function of genes regulating expression of luminescence. Mol Microbiol. 1993;9(4):773–86. PMID: 8231809
    Reference Link
  • 1.
    Bassler B, Wright M, Silverman M. Multiple signalling systems controlling expression of luminescence in Vibrio harveyi: sequence and function of genes encoding a second sensory pathway. Mol Microbiol. 1994;13(2):273–86. PMID: 7984107
    Reference Link
  • 1.
    Bassler B, Wright M, Silverman M. Sequence and function of LuxO, a negative regulator of luminescence in Vibrio harveyi. Mol Microbiol. 1994;12(3):403–12. PMID: 8065259
    Reference Link
  • 1.
    Freeman J, Lilley B, Bassler B. A genetic analysis of the functions of LuxN: a two-component hybrid sensor kinase that regulates quorum sensing in Vibrio harveyi. Mol Microbiol. 2000;35(1):139–49. PMID: 10632884
    Reference Link
  • 1.
    Xavier K, Bassler B. Regulation of uptake and processing of the quorum-sensing autoinducer AI-2 in Escherichia coli. J Bacteriol. 2005;187(1):238–48. PMCID: PMC538819
    Reference Link
  • 1.
    Tu K, Bassler B. Multiple small RNAs act additively to integrate sensory information and control quorum sensing in Vibrio harveyi. Genes Dev. 2007;21(2):221–33. PMCID: PMC1770904
    Reference Link
  • 1.
    Hammer B, Bassler B. Regulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae. Proc Natl Acad Sci U S A. 2007;104(27):11145–9. PMCID: PMC1888797
    Reference Link
  • 1.
    Svenningsen S, Waters C, Bassler B. A negative feedback loop involving small RNAs accelerates Vibrio cholerae’s transition out of quorum-sensing mode. Genes Dev. 2008;22(2):226–38. PMCID: PMC2192756
    Reference Link
  • 1.
    Svenningsen S, Tu K, Bassler B. Gene dosage compensation calibrates four regulatory RNAs to control Vibrio cholerae quorum sensing. EMBO J. 2009;28(4):429–39. PMCID: PMC2632942
    Reference Link
  • 1.
    Tu K, Long T, Svenningsen S, Wingreen N, Bassler B. Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response. Mol Cell. 2010;37(4):567–79. PMCID: PMC2844700
    Reference Link
  • 1.
    Rutherford S, van Kessel J, Shao Y, Bassler B. AphA and LuxR/HapR reciprocally control quorum sensing in vibrios. Genes Dev. 2011;25(4):397–408. PMCID: PMC3042162
    Reference Link
  • 1.
    Shao Y, Bassler B. Quorum-sensing non-coding small RNAs use unique pairing regions to differentially control mRNA targets. Mol Microbiol. 2012;83(3):599–611. PMCID: PMC3262071
    Reference Link
  • 1.
    Feng L, Rutherford S, Papenfort K, Bagert J, van Kessel J, Tirrell D, Wingreen N, Bassler B. A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics. Cell. 2015;160(1-2):228–40. PMCID: PMC4313533
    Reference Link
  • 1.
    Papenfort K, Förstner K, Cong J-P, Sharma C, Bassler B. Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation. Proc Natl Acad Sci U S A. 2015;112(7):E766–75. PMCID: PMC4343088
    Reference Link

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