An enhancer of contributes to parallel evolution of cryptically colored beach mice.

TitleAn enhancer of contributes to parallel evolution of cryptically colored beach mice.
Publication TypeJournal Article
Year of Publication2022
AuthorsT Wooldridge, B, Kautt, AF, Lassance, J-M, McFadden, S, Domingues, VS, Mallarino, R, Hoekstra, HE
JournalProc Natl Acad Sci U S A
Volume119
Issue27
Paginatione2202862119
Date Published2022 07 05
ISSN1091-6490
KeywordsAgouti Signaling Protein, Alleles, Animals, Biological Evolution, Enhancer Elements, Genetic, Genes, Reporter, Peromyscus, Skin Pigmentation
Abstract

<p>Identifying the genetic basis of repeatedly evolved traits provides a way to reconstruct their evolutionary history and ultimately investigate the predictability of evolution. Here, we focus on the oldfield mouse (), which occurs in the southeastern United States, where it exhibits considerable color variation. Dorsal coats range from dark brown in mainland mice to near white in mice inhabiting sandy beaches; this light pelage has evolved independently on Florida's Gulf and Atlantic coasts as camouflage from predators. To facilitate genomic analyses, we first generated a chromosome-level genome assembly of . Next, in a uniquely variable mainland population (), we scored 23 pigment traits and performed targeted resequencing in 168 mice. We find that pigment variation is strongly associated with an ∼2-kb region ∼5 kb upstream of the coding region. Using a reporter-gene assay, we demonstrate that this regulatory region contains an enhancer that drives expression in the dermis of mouse embryos during the establishment of pigment prepatterns. Moreover, extended tracts of homozygosity in this region indicate that the light allele experienced recent and strong positive selection. Notably, this same light allele appears fixed in both Gulf and Atlantic coast beach mice, despite these populations being separated by >1,000 km. Together, our results suggest that this identified enhancer allele has been maintained in mainland populations as standing genetic variation and from there, has spread to and been selected in two independent beach mouse lineages, thereby facilitating their rapid and parallel evolution.</p>

DOI10.1073/pnas.2202862119
Alternate JournalProc Natl Acad Sci U S A
PubMed ID35776547
PubMed Central IDPMC9271204
Grant ListR35 GM133758 / GM / NIGMS NIH HHS / United States
/ HHMI / Howard Hughes Medical Institute / United States