Divergent evolution of a bifunctional de novo protein. Author Betsy Smith, Ann Mularz, Michael Hecht Publication Year 2015 Type Journal Article Abstract Primordial proteins, the evolutionary ancestors of modern sequences, are presumed to have been minimally active and nonspecific. Following eons of selective pressure, these early progenitors evolved into highly active and specific proteins. While evolutionary trajectories from poorly active and multifunctional generalists toward highly active specialists likely occurred many times in evolutionary history, such pathways are difficult to reconstruct in natural systems, where primordial sequences are lost to time. To test the hypothesis that selection for enhanced activity leads to a loss of promiscuity, we evolved a de novo designed bifunctional protein. The parental protein, denoted Syn-IF, was chosen from a library of binary patterned 4-helix bundles. Syn-IF was shown previously to rescue two different auxotrophic strains of E. coli: ΔilvA and Δfes. These two strains contain deletions for proteins with very different biochemical functions; IlvA is involved in isoleucine biosynthesis, while Fes is involved in iron assimilation. In two separate experiments, Syn-IF, was evolved for faster rescue of either ΔilvA or Δfes. Following multiple rounds of mutagenesis, two new proteins were selected, each capable of rescuing the selected function significantly faster than the parental protein. In each case, the evolved protein also lost the ability to rescue the unselected function. In both evolutionary trajectories, the original bifunctional generalist was evolved into a monofunctional specialist with enhanced activity. Keywords Escherichia coli, Molecular Sequence Data, Gene Deletion, Amino Acid Sequence, Sequence Alignment, Protein Structure, Secondary, Proteins, Evolution, Molecular, Directed Molecular Evolution Journal Protein Sci Volume 24 Issue 2 Pages 246-52 Date Published 2015 Feb ISSN Number 1469-896X DOI 10.1002/pro.2611 Alternate Journal Protein Sci PMCID PMC4315662 PMID 25420677 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML