De Novo Proteins with Life-Sustaining Functions Are Structurally Dynamic. Author Grant Murphy, Jack Greisman, Michael Hecht Publication Year 2016 Type Journal Article Abstract Designing and producing novel proteins that fold into stable structures and provide essential biological functions are key goals in synthetic biology. In initial steps toward achieving these goals, we constructed a combinatorial library of de novo proteins designed to fold into 4-helix bundles. As described previously, screening this library for sequences that function in vivo to rescue conditionally lethal mutants of Escherichia coli (auxotrophs) yielded several de novo sequences, termed SynRescue proteins, which rescued four different E. coli auxotrophs. In an effort to understand the structural requirements necessary for auxotroph rescue, we investigated the biophysical properties of the SynRescue proteins, using both computational and experimental approaches. Results from circular dichroism, size-exclusion chromatography, and NMR demonstrate that the SynRescue proteins are α-helical and relatively stable. Surprisingly, however, they do not form well-ordered structures. Instead, they form dynamic structures that fluctuate between monomeric and dimeric states. These findings show that a well-ordered structure is not a prerequisite for life-sustaining functions, and suggests that dynamic structures may have been important in the early evolution of protein function. Keywords Escherichia coli, Molecular Sequence Data, Protein Conformation, Amino Acid Sequence, Magnetic Resonance Spectroscopy, Proteins, Protein Multimerization, Biophysical Phenomena, Circular Dichroism, Chromatography, Gel, Microbial Viability Journal J Mol Biol Volume 428 Issue 2 Pt A Pages 399-411 Date Published 2016 Jan 29 ISSN Number 1089-8638 DOI 10.1016/j.jmb.2015.12.008 Alternate Journal J Mol Biol PMCID PMC4744525 PMID 26707197 PubMedPubMed CentralGoogle ScholarBibTeXEndNote X3 XML