He G, GrandPre T, Wilson H, Zhang Y, Jonikas M, Wingreen N, Wang Q. Phase-separating pyrenoid proteins form complexes in the dilute phase. Commun Biol. 2023;6(1):19. PMCID: PMC9825591

Martínez-Calvo A, Bhattacharjee T, Bay K, Luu H, Hancock A, Wingreen N, Datta S. Morphological instability and roughening of growing 3D bacterial colonies. Proc Natl Acad Sci U S A. 2022;119(43):e2208019119. PMCID: PMC9618147

Ellison C, Fei C, Dalia T, Wingreen N, Dalia A, Shaevitz J, Gitai Z. Subcellular localization of type IV pili regulates bacterial multicellular development. Nat Commun. 2022;13(1):6334. PMCID: PMC9596432

Zhang D, Li S, King C, Wingreen N, Gitai Z, Li Z. Global and gene-specific translational regulation in Escherichia coli across different conditions. PLoS Comput Biol. 2022;18(10):e1010641. PMCID: PMC9624429

Landajuela A, Braun M, Martínez-Calvo A, Rodrigues C, Perez C, Doan T, Rudner D, Wingreen N, Karatekin E. Membrane fission during bacterial spore development requires cellular inflation driven by DNA translocation. Curr Biol. 2022;32(19):4186–4200.e8. PMCID: PMC9730832

Bridges A, Prentice J, Wingreen N, Bassler B. Signal Transduction Network Principles Underlying Bacterial Collective Behaviors. Annu Rev Microbiol. 2022;76:235–257. PMCID: PMC9463083

Fei C, Wilson A, Mangan N, Wingreen N, Jonikas M. Modelling the pyrenoid-based CO-concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops. Nat Plants. 2022;8(5):583–595. PMCID: PMC9122830

Lopez J, Wingreen N. Noisy metabolism can promote microbial cross-feeding. Elife. 2022;11. PMCID: PMC8983042

Bridges A, Prentice J, Fei C, Wingreen N, Bassler B. Quantitative input-output dynamics of a c-di-GMP signal transduction cascade in Vibrio cholerae. PLoS Biol. 2022;20(3):e3001585. PMCID: PMC8967002

Pyo A, Zhang Y, Wingreen N. Surface tension and super-stoichiometric surface enrichment in two-component biomolecular condensates. iScience. 2022;25(2):103852. PMCID: PMC8851291

Ronceray P, Zhang Y, Liu X, Wingreen N. Stoichiometry Controls the Dynamics of Liquid Condensates of Associative Proteins. Phys Rev Lett. 2022;128(3):038102. PMID: 35119898

McEnany J, Meir Y, Wingreen N. piRNAs of Caenorhabditis elegans broadly silence nonself sequences through functionally random targeting. Nucleic Acids Res. 2022;50(3):1416–1429. PMCID: PMC8860604

Weiner B, Pyo A, Meir Y, Wingreen N. Motif-pattern dependence of biomolecular phase separation driven by specific interactions. PLoS Comput Biol. 2021;17(12):e1009748. PMCID: PMC8751999

Erez A, Lopez J, Meir Y, Wingreen N. Enzyme regulation and mutation in a model serial-dilution ecosystem. Phys Rev E. 2021;104(4-1):044412. PMID: 34781576

Jemielita M, Mashruwala A, Valastyan J, Wingreen N, Bassler B. Secreted Proteases Control the Timing of Aggregative Community Formation in Vibrio cholerae. mBio. 2021;12(6):e0151821. PMCID: PMC8609355

Miangolarra M, Li S, Joanny J-F, Wingreen N, Castellana M. Steric interactions and out-of-equilibrium processes control the internal organization of bacteria. Proc Natl Acad Sci U S A. 2021;118(43). PMCID: PMC8639350

Pareek V, Sha Z, He J, Wingreen N, Benkovic S. Metabolic channeling: predictions, deductions, and evidence. Mol Cell. 2021;81(18):3775–3785. PMCID: PMC8485759

Landajuela A, Braun M, Rodrigues C, Martínez-Calvo A, Doan T, Horenkamp F, Andronicos A, Shteyn V, Williams N, Lin C, Wingreen N, Rudner D, Karatekin E. FisB relies on homo-oligomerization and lipid binding to catalyze membrane fission in bacteria. PLoS Biol. 2021;19(6):e3001314. PMCID: PMC8274934

Lopez J, Donia M, Wingreen N. Publisher Correction: Modeling the ecology of parasitic plasmids. ISME J. 2021;15(12):3722. PMCID: PMC8630101

Zhang Y, Lee D, Meir Y, Brangwynne C, Wingreen N. Mechanical Frustration of Phase Separation in the Cell Nucleus by Chromatin. Phys Rev Lett. 2021;126(25):258102. PMCID: PMC8604804

Saad-Roy C, Grenfell B, Levin S, van den Driessche P, Wingreen N. Evolution of an asymptomatic first stage of infection in a heterogeneous population. J R Soc Interface. 2021;18(179):20210175. PMCID: PMC8205539

Qin B, Fei C, Wang B, Stone H, Wingreen N, Bassler B. Hierarchical transitions and fractal wrinkling drive bacterial pellicle morphogenesis. Proc Natl Acad Sci U S A. 2021;118(20). PMCID: PMC8157956

Narla A, Borenstein D, Wingreen N. A biophysical limit for quorum sensing in biofilms. Proc Natl Acad Sci U S A. 2021;118(21). PMCID: PMC8166027

Zhang Y, Xu B, Weiner B, Meir Y, Wingreen N. Decoding the physical principles of two-component biomolecular phase separation. Elife. 2021;10. PMCID: PMC7952089

Lopez J, Donia M, Wingreen N. Modeling the ecology of parasitic plasmids. ISME J. 2021;15(10):2843–2852. PMCID: PMC8443676

Saad-Roy C, Grenfell B, Levin S, Pellis L, Stage H, van den Driessche P, Wingreen N. Superinfection and the evolution of an initial asymptomatic stage. R Soc Open Sci. 2021;8(1):202212. PMCID: PMC7890506

Koch M, Fei C, Wingreen N, Shaevitz J, Gitai Z. Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili. Proc Natl Acad Sci U S A. 2021;118(8). PMCID: PMC7923367

Wong G, Antani J, Lele P, Chen J, Nan B, Kühn M, Persat A, Bru J-L, Høyland-Kroghsbo N, Siryaporn A, Conrad J, Carrara F, Yawata Y, Stocker R, Brun Y, Whitfield G, Lee C, de Anda J, Schmidt W, Golestanian R, O’Toole G, Floyd K, Yildiz F, Yang S, Jin F, Toyofuku M, Eberl L, Nomura N, Zacharoff L, El-Naggar M, Yalcin S, Malvankar N, Rojas-Andrade M, Hochbaum A, Yan J, Stone H, Wingreen N, Bassler B, Wu Y, Xu H, Drescher K, Dunkel J. Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation. Phys Biol. 2021;18(5). PMCID: PMC8506656

Grimm J, Shi H, Wang W, Mitchell A, Wingreen N, Huang K, Silhavy T. The inner membrane protein YhdP modulates the rate of anterograde phospholipid flow in . Proc Natl Acad Sci U S A. 2020;117(43):26907–26914. PMCID: PMC7604412

Erez A, Lopez J, Weiner B, Meir Y, Wingreen N. Nutrient levels and trade-offs control diversity in a serial dilution ecosystem. Elife. 2020;9. PMCID: PMC7486120

Li Z, Liu B, Li S, King C, Gitai Z, Wingreen N. Modeling microbial metabolic trade-offs in a chemostat. PLoS Comput Biol. 2020;16(8):e1008156. PMCID: PMC7482850

Jemielita M, Wingreen N, Bassler B. Quorum sensing controls multicellular aggregate formation. Elife. 2018;7. PMCID: PMC6351105

Qin B, Fei C, Bridges A, Mashruwala A, Stone H, Wingreen N, Bassler B. Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy. Science. 2020;369(6499):71–77. PMCID: PMC7426073

Tareen A, Wingreen N, Mukhopadhyay R. Asymmetry between Activators and Deactivators in Functional Protein Networks. Sci Rep. 2020;10(1):10131. PMCID: PMC7311538

Saad-Roy C, Arinaminpathy N, Wingreen N, Levin S, Akey J, Grenfell B. Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. PLoS Comput Biol. 2020;16(6):e1007892. PMCID: PMC7316228

Saad-Roy C, Wingreen N, Levin S, Grenfell B. Dynamics in a simple evolutionary-epidemiological model for the evolution of an initial asymptomatic infection stage. Proc Natl Acad Sci U S A. 2020;117(21):11541–11550. PMCID: PMC7261016

Fei C, Mao S, Yan J, Alert R, Stone H, Bassler B, Wingreen N, Košmrlj A. Nonuniform growth and surface friction determine bacterial biofilm morphology on soft substrates. Proc Natl Acad Sci U S A. 2020;117(14):7622–7632. PMCID: PMC7148565

Rath S, Prangley E, Donovan J, Demarest K, Wingreen N, Meir Y, Korennykh A. Concerted 2-5A-Mediated mRNA Decay and Transcription Reprogram Protein Synthesis in the dsRNA Response. Mol Cell. 2019;75(6):1218–1228.e6. PMCID: PMC6754276

Weiner B, Posfai A, Wingreen N. Spatial ecology of territorial populations. Proc Natl Acad Sci U S A. 2019;116(36):17874–17879. PMCID: PMC6731762

Wang S-W, Bitbol A-F, Wingreen N. Revealing evolutionary constraints on proteins through sequence analysis. PLoS Comput Biol. 2019;15(4):e1007010. PMCID: PMC6502352

Chitrakar A, Rath S, Donovan J, Demarest K, Li Y, Sridhar R, Weiss S, Kotenko S, Wingreen N, Korennykh A. Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L. Proc Natl Acad Sci U S A. 2019;116(6):2103–2111. PMCID: PMC6369740

Ali M, Huang K, Wingreen N, Mukhopadhyay R. Cell geometry and leaflet bilayer asymmetry regulate domain formation in plasma membranes. Phys Rev E. 2019;99(1-1):012401. PMCID: PMC6553634

Beroz F, Yan J, Sabass B, Stone H, Bassler B, Wingreen N, Meir Y. Verticalization of bacterial biofilms. Nat Phys. 2018;14(9):954–960. PMCID: PMC6426328

Yan J, Fei C, Mao S, Moreau A, Wingreen N, Košmrlj A, Stone H, Bassler B. Mechanical instability and interfacial energy drive biofilm morphogenesis. Elife. 2019;8. PMCID: PMC6453567

Mayer A, Zhang Y, Perelson A, Wingreen N. Regulation of T cell expansion by antigen presentation dynamics. Proc Natl Acad Sci U S A. 2019;116(13):5914–5919. PMCID: PMC6442601

Shin Y, Chang Y-C, Lee D, Berry J, Sanders D, Ronceray P, Wingreen N, Haataja M, Brangwynne C. Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome. Cell. 2018;175(6):1481–1491.e13. PMCID: PMC6724728

Yan J, Moreau A, Khodaparast S, Perazzo A, Feng J, Fei C, Mao S, Mukherjee S, Košmrlj A, Wingreen N, Bassler B, Stone H. Bacterial Biofilm Material Properties Enable Removal and Transfer by Capillary Peeling. Adv Mater. 2018;30(46):e1804153. PMCID: PMC8865467

Li S, Li Z, Park J, King C, Rabinowitz J, Wingreen N, Gitai Z. Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions. Nat Microbiol. 2018;3(8):939–947. PMCID: PMC6278830

Ali M, Wingreen N, Mukhopadhyay R. Hidden long evolutionary memory in a model biochemical network. Phys Rev E. 2018;97(4-1):040401. PMCID: PMC5973509

Tareen A, Wingreen N, Mukhopadhyay R. Modeling evolution of crosstalk in noisy signal transduction networks. Phys Rev E. 2018;97(2-1):020402. PMCID: PMC5973540