Lu J, Hamblen E, Brenner L, King J, vonHoldt B, DeCandia A. Ear mite infection restructures otic microbial networks in conservation-reliant Santa Catalina Island foxes (Urocyon littoralis catalinae). Mol Ecol. 2023;32(4):892–903. PMID: 36435981

Barnes T, Karlin M, vonHoldt B, Adams J, Waits L, Hinton J, Henderson J, Brzeski K. Genetic diversity and family groups detected in a coyote population with red wolf ancestry on Galveston Island, Texas. BMC Ecol Evol. 2022;22(1):134. PMCID: PMC9664737

Cubaynes S, Brandell E, Stahler D, Smith D, Almberg E, Schindler S, Wayne R, Dobson A, vonHoldt B, MacNulty D, Cross P, Hudson P, Coulson T. Disease outbreaks select for mate choice and coat color in wolves. Science. 2022;378(6617):300–303. PMID: 36264784

Caragiulo A, Gaughran S, Duncan N, Nagy C, Weckel M, vonHoldt B. Coyotes in New York City Carry Variable Genomic Dog Ancestry and Influence Their Interactions with Humans. Genes (Basel). 2022;13(9). PMCID: PMC9498729

vonHoldt B, Hinton J, Shutt A, Murphy S, Karlin M, Adams J, Waits L, Brzeski K. Reviving ghost alleles: Genetically admixed coyotes along the American Gulf Coast are critical for saving the endangered red wolf. Sci Adv. 2022;8(26):eabn7731. PMCID: PMC9242586

Rubbi L, Zhang H, Feng J, He C, Kurnia P, Ratan P, Tammana A, House S, Thompson M, Farrell C, Snir S, Stahler D, Ostrander E, vonHoldt B, Pellegrini M. The effects of age, sex, weight, and breed on canid methylomes. Epigenetics. 2022;17(11):1497–1512. PMCID: PMC9586589

Plassais J, vonHoldt B, Parker H, Carmagnini A, Dubos N, Papa I, Bevant K, Derrien T, Hennelly L, Whitaker T, Harris A, Hogan A, Huson H, Zaibert V, Linderholm A, Haile J, Fest T, Habib B, Sacks B, Benecke N, Outram A, Sablin M, Germonpré M, Larson G, Frantz L, Ostrander E. Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids. Curr Biol. 2022;32(4):889–897.e9. PMCID: PMC8891063

vonHoldt B, Brzeski K, Aardema M, Schell C, Rutledge L, Fain S, Shutt A, Linderholm A, Murphy W. Persistence and expansion of cryptic endangered red wolf genomic ancestry along the American Gulf coast. Mol Ecol. 2022;31(21):5440–5454. PMID: 34585803

Bredemeyer K, Seabury C, Stickney M, McCarrey J, vonHoldt B, Murphy W. Rapid Macrosatellite Evolution Promotes X-Linked Hybrid Male Sterility in a Feline Interspecies Cross. Mol Biol Evol. 2021;38(12):5588–5609. PMCID: PMC8662614

DeCandia A, Cassidy K, Stahler D, Stahler E, vonHoldt B. Social environment and genetics underlie body site-specific microbiomes of Yellowstone National Park gray wolves (). Ecol Evol. 2021;11(14):9472–9488. PMCID: PMC8293786

Taron U, Salado I, Escobar-Rodríguez M, Westbury M, Butschkau S, Paijmans J, vonHoldt B, Hofreiter M, Leonard J. A sliver of the past: The decimation of the genetic diversity of the Mexican wolf. Mol Ecol. 2021;30(23):6340–6354. PMID: 34161633

Salomons H, Smith K, Callahan-Beckel M, Callahan M, Levy K, Kennedy B, Bray E, Gnanadesikan G, Horschler D, Gruen M, Tan J, White P, vonHoldt B, MacLean E, Hare B. Cooperative Communication with Humans Evolved to Emerge Early in Domestic Dogs. Curr Biol. 2021;31(14):3137–3144.e11. PMCID: PMC8610089

Johnston R, Rheinwald J, vonHoldt B, Stahler D, Lowry W, Tung J, Wayne R. K Locus Effects in Gray Wolves: Experimental Assessment of TLR3 Signaling and the Gene Expression Response to Canine Distemper Virus. J Hered. 2021;112(5):458–468. PMCID: PMC8567826

DeCandia A, Schrom E, Brandell E, Stahler D, vonHoldt B. Sarcoptic mange severity is associated with reduced genomic variation and evidence of selection in Yellowstone National Park wolves (). Evol Appl. 2021;14(2):429–445. PMCID: PMC7896714

Carroll C, Rohlf D, vonHoldt B, Treves A, Hendricks S. Wolf Delisting Challenges Demonstrate Need for an Improved Framework for Conserving Intraspecific Variation under the Endangered Species Act. Bioscience. 2021;71(1):73–84. PMCID: PMC7791361

Heppenheimer E, Brzeski K, Hinton J, Chamberlain M, Robinson J, Wayne R, vonHoldt B. A Genome-Wide Perspective on the Persistence of Red Wolf Ancestry in Southeastern Canids. J Hered. 2020;111(3):277–286. PMID: 32090268

vonHoldt B, Aardema M. Updating the Bibliography of Interbreeding among Canis in North America. J Hered. 2020;111(3):249–262. PMID: 32034410

Aardema M, vonHoldt B, Fritz M, Davis S. Global evaluation of taxonomic relationships and admixture within the Culex pipiens complex of mosquitoes. Parasit Vectors. 2020;13(1):8. PMCID: PMC6950815

vonHoldt B, DeCandia A, Heppenheimer E, Janowitz-Koch I, Shi R, Zhou H, German C, Brzeski K, Cassidy K, Stahler D, Sinsheimer J. Heritability of interpack aggression in a wild pedigreed population of North American grey wolves. Mol Ecol. 2020;29(10):1764–1775. PMCID: PMC7299816

DeCandia A, Brenner L, King J, vonHoldt B. Ear mite infection is associated with altered microbial communities in genetically depauperate Santa Catalina Island foxes (Urocyon littoralis catalinae). Mol Ecol. 2020;29(8):1463–1475. PMID: 31821650

MacLean E, Snyder-Mackler N, vonHoldt B, Serpell J. Highly heritable and functionally relevant breed differences in dog behaviour. Proc Biol Sci. 2019;286(1912):20190716. PMCID: PMC6790757

Wang G-D, Larson G, Kidd J, vonHoldt B, Ostrander E, Zhang Y-P. Dog10K: the International Consortium of Canine Genome Sequencing. Natl Sci Rev. 2019;6(4):611–613. PMCID: PMC6776106

Ostrander E, Wang G-D, Larson G, vonHoldt B, Davis B, Jagannathan V, Hitte C, Wayne R, Zhang Y-P, Dog10K Consortium. Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health. Natl Sci Rev. 2019;6(4):810–824. PMCID: PMC6776107

DeCandia A, Leverett K, vonHoldt B. Of microbes and mange: consistent changes in the skin microbiome of three canid species infected with Sarcoptes scabiei mites. Parasit Vectors. 2019;12(1):488. PMCID: PMC6796464

Tandon D, Ressler K, Petticord D, Papa A, Jiranek J, Wilkinson R, Kartzinel R, Ostrander E, Burney N, Borden C, Udell M, vonHoldt B. Homozygosity for Mobile Element Insertions Associated with Could Predict Success in Assistance Dog Training Programs. Genes (Basel). 2019;10(6). PMCID: PMC6627829

DeCandia A, Brzeski K, Heppenheimer E, Caro C, Camenisch G, Wandeler P, Driscoll C, vonHoldt B. Urban colonization through multiple genetic lenses: The city-fox phenomenon revisited. Ecol Evol. 2019;9(4):2046–2060. PMCID: PMC6392345

Heppenheimer E, Brzeski K, Hinton J, Patterson B, Rutledge L, DeCandia A, Wheeldon T, Fain S, Hohenlohe P, Kays R, White B, Chamberlain M, vonHoldt B. High genomic diversity and candidate genes under selection associated with range expansion in eastern coyote () populations. Ecol Evol. 2018;8(24):12641–12655. PMCID: PMC6309008

Heppenheimer E, Brzeski K, Wooten R, Waddell W, Rutledge L, Chamberlain M, Stahler D, Hinton J, vonHoldt B. Rediscovery of Red Wolf Ghost Alleles in a Canid Population Along the American Gulf Coast. Genes (Basel). 2018;9(12). PMCID: PMC6315914

vonHoldt B, Kartzinel R, Huber C, Le Underwood V, Zhen Y, Ruegg K, Lohmueller K, Smith T. Growth factor gene IGF1 is associated with bill size in the black-bellied seedcracker Pyrenestes ostrinus. Nat Commun. 2018;9(1):4855. PMCID: PMC6242981

Pilot M, Greco C, vonHoldt B, Randi E, Jędrzejewski W, Sidorovich V, Konopiński M, Ostrander E, Wayne R. Widespread, long-term admixture between grey wolves and domestic dogs across Eurasia and its implications for the conservation status of hybrids. Evol Appl. 2018;11(5):662–680. PMCID: PMC5978975

Hendricks S, Schweizer R, Harrigan R, Pollinger J, Paquet P, Darimont C, Adams J, Waits L, vonHoldt B, Hohenlohe P, Wayne R. Natural re-colonization and admixture of wolves (Canis lupus) in the US Pacific Northwest: challenges for the protection and management of rare and endangered taxa. Heredity (Edinb). 2019;122(2):133–149. PMCID: PMC6327037

vonHoldt B, Ji S, Aardema M, Stahler D, Udell M, Sinsheimer J. Activity of Genes with Functions in Human Williams-Beuren Syndrome Is Impacted by Mobile Element Insertions in the Gray Wolf Genome. Genome Biol Evol. 2018;10(6):1546–1553. PMCID: PMC6007319

Robinson J, Del Vecchyo D, Fan Z, Kim B, vonHoldt B, Marsden C, Lohmueller K, Wayne R. Genomic Flatlining in the Endangered Island Fox. Curr Biol. 2016;26(9):1183–9. PMID: 27112291

DeCandia A, Dobson A, vonHoldt B. Toward an integrative molecular approach to wildlife disease. Conserv Biol. 2018;32(4):798–807. PMCID: PMC7162296

Charruau P, Johnston R, Stahler D, Lea A, Snyder-Mackler N, Smith D, vonHoldt B, Cole S, Tung J, Wayne R. Pervasive Effects of Aging on Gene Expression in Wild Wolves. Mol Biol Evol. 2016;33(8):1967–78. PMCID: PMC5854094

vonHoldt B, Shuldiner E, Koch I, Kartzinel R, Hogan A, Brubaker L, Wanser S, Stahler D, Wynne C, Ostrander E, Sinsheimer J, Udell M. Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Sci Adv. 2017;3(7):e1700398. PMCID: PMC5517105

vonHoldt B, Cahill J, Gronau I, Shapiro B, Wall J, Wayne R. Response to Hohenlohe . Sci Adv. 2017;3(6):e1701233. PMCID: PMC5462503

Koch I, Clark M, Thompson M, Deere-Machemer K, Wang J, Duarte L, Gnanadesikan G, McCoy E, Rubbi L, Stahler D, Pellegrini M, Ostrander E, Wayne R, Sinsheimer J, vonHoldt B. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Mol Ecol. 2016;25(8):1838–55. PMCID: PMC4849173

vonHoldt B, Kays R, Pollinger J, Wayne R. Admixture mapping identifies introgressed genomic regions in North American canids. Mol Ecol. 2016;25(11):2443–53. PMID: 27106273

Snir S, vonHoldt B, Pellegrini M. A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput Biol. 2016;12(11):e1005183. PMCID: PMC5106012

vonHoldt B, Pollinger J, Earl D, Knowles J, Boyko A, Parker H, Geffen E, Pilot M, Jedrzejewski W, Jedrzejewska B, Sidorovich V, Greco C, Randi E, Musiani M, Kays R, Bustamante C, Ostrander E, Novembre J, Wayne R. A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Res. 2011;21(8):1294–305. PMCID: PMC3149496

vonHoldt B, Takuno S, Gaut B. Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). Mol Biol Evol. 2012;29(10):3193–203. PMID: 22593226

Fredrickson R, Hedrick P, Wayne R, vonHoldt B, Phillips M. Mexican Wolves Are a Valid Subspecies and an Appropriate Conservation Target. J Hered. 2015;106(4):415–6. PMID: 25964445

Schweizer R, vonHoldt B, Harrigan R, Knowles J, Musiani M, Coltman D, Novembre J, Wayne R. Genetic subdivision and candidate genes under selection in North American grey wolves. Mol Ecol. 2016;25(1):380–402. PMID: 26333947

Verhoeven K, vonHoldt B, Sork V. Epigenetics in ecology and evolution: what we know and what we need to know. Mol Ecol. 2016;25(8):1631–8. PMID: 26994410