1.Diegmiller R, Nunley H, Shvartsman S, Alsous J. Quantitative models for building and growing fated small cell networks. Interface Focus. 2022;12(4):20210082. PMCID: PMC9184967 Reference Link
1.Singh J, Alsous J, Garikipati K, Shvartsman S. Mechanics of stabilized intercellular bridges. Biophys J. 2022;121(16):3162–3171. PMCID: PMC9463629 Reference Link
1.McFann S, Shvartsman S, Toettcher J. Putting in the Erk: Growth factor signaling and mesoderm morphogenesis. Curr Top Dev Biol. 2022;149:263–310. PMID: 35606058 Reference Link
1.Keenan S, Avdeeva M, Yang L, Alber D, Wieschaus E, Shvartsman S. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022;119(15):e2112892119. PMCID: PMC9169638 Reference Link
1.Stern T, Shvartsman S, Wieschaus E. Deconstructing gastrulation at single-cell resolution. Curr Biol. 2022;32(8):1861–1868.e7. PMCID: PMC9221752 Reference Link
1.Alsous J, Rozman J, Marmion R, Košmrlj A, Shvartsman S. Clonal dominance in excitable cell networks. Nat Phys. 2021;17(12):1391–1395. PMCID: PMC8887698 Reference Link
1.Weaver C, Patel A, Shvartsman S, Levine M, Treen N. ERK signaling dissolves ERF repression condensates in living embryos. Proc Natl Acad Sci U S A. 2022;119(9). PMCID: PMC8892517 Reference Link
1.Doherty C, Amargant F, Shvartsman S, Duncan F, Gavis E. Bidirectional communication in oogenesis: a dynamic conversation in mice and Drosophila. Trends Cell Biol. 2022;32(4):311–323. PMCID: PMC8917990 Reference Link
1.Huang S-K, Whitney P, Dutta S, Shvartsman S, Rushlow C. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021;31(22):5102–5110.e5. PMCID: PMC8612988 Reference Link
1.Crapse J, Pappireddi N, Gupta M, Shvartsman S, Wieschaus E, Wühr M. Evaluating the Arrhenius equation for developmental processes. Mol Syst Biol. 2021;17(8):e9895. PMCID: PMC8377445 Reference Link
1.Diegmiller R, Doherty C, Stern T, Alsous J, Shvartsman S. Size scaling in collective cell growth. Development. 2021;148(18). PMCID: PMC8489028 Reference Link
1.Patel A, Zhang L, Keenan S, Rushlow C, Fradin C, Shvartsman S. Capicua is a fast-acting transcriptional brake. Curr Biol. 2021;31(16):3639–3647.e5. PMCID: PMC8612007 Reference Link
1.Shao B, Diegmiller R, Shvartsman S. Collective oscillations of coupled cell cycles. Biophys J. 2021;120(19):4242–4251. PMCID: PMC8516640 Reference Link
1.McFann S, Dutta S, Toettcher J, Shvartsman S. Temporal integration of inductive cues on the way to gastrulation. Proc Natl Acad Sci U S A. 2021;118(23). PMCID: PMC8201965 Reference Link
1.Doherty C, Diegmiller R, Kapasiawala M, Gavis E, Shvartsman S. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021;56(6):860–870.e8. PMCID: PMC8265018 Reference Link
1.Diegmiller R, Zhang L, Gameiro M, Barr J, Alsous J, Schedl P, Shvartsman S, Mischaikow K. Mapping parameter spaces of biological switches. PLoS Comput Biol. 2021;17(2):e1008711. PMCID: PMC7895388 Reference Link
1.Marmion R, Yang L, Goyal Y, Jindal G, Wetzel J, Singh M, Schüpbach T, Shvartsman S. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Mol Biol Cell. 2021;32(9):974–983. PMCID: PMC8108529 Reference Link
1.Fiore V, Krajnc M, Quiroz F, Levorse J, Pasolli A, Shvartsman S, Fuchs E. Publisher Correction: Mechanics of a multilayer epithelium instruct tumour architecture and function. Nature. 2020;586(7827):E9. PMID: 32913346 Reference Link
1.Stern T, Shvartsman S, Wieschaus E. Template-based mapping of dynamic motifs in tissue morphogenesis. PLoS Comput Biol. 2020;16(8):e1008049. PMCID: PMC7442231 Reference Link
1.Fiore V, Krajnc M, Quiroz F, Levorse J, Pasolli A, Shvartsman S, Fuchs E. Mechanics of a multilayer epithelium instruct tumour architecture and function. Nature. 2020;585(7825):433–439. PMCID: PMC7787055 Reference Link
1.Johnson H, Djabrayan N, Shvartsman S, Toettcher J. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020;30(17):3414–3424.e3. PMCID: PMC7730203 Reference Link
1.Song Y, Shvartsman S. Chemical Embryology Redux: Metabolic Control of Development. Trends Genet. 2020;36(8):577–586. PMID: 32532533 Reference Link
1.Dutta S, Djabrayan N, Smits C, Rowley C, Shvartsman S. Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo. Biophys J. 2020;118(10):2349–2353. PMCID: PMC7231883 Reference Link
1.Keenan S, Blythe S, Marmion R, Djabrayan N, Wieschaus E, Shvartsman S. Rapid Dynamics of Signal-Dependent Transcriptional Repression by Capicua. Dev Cell. 2020;52(6):794–801.e4. PMCID: PMC7161736 Reference Link
1.Smits C, Shvartsman S. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020;137:193–217. PMID: 32143743 Reference Link
1.Yeung E, McFann S, Marsh L, Dufresne E, Filippi S, Harrington H, Shvartsman S, Wühr M. Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. Curr Biol. 2020;30(5):877–882.e6. PMCID: PMC7085240 Reference Link
1.Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman S, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020;31(4):235–243. PMCID: PMC7183763 Reference Link
1.Patel A, Yeung E, McGuire S, Wu A, Toettcher J, Burdine R, Shvartsman S. Optimizing photoswitchable MEK. Proc Natl Acad Sci U S A. 2019;116(51):25756–25763. PMCID: PMC6926043 Reference Link
1.Dutta S, Djabrayan N, Torquato S, Shvartsman S, Krajnc M. Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo. Biophys J. 2019;117(4):743–750. PMCID: PMC6712419 Reference Link
1.Taylor C, Cormier K, Keenan S, Earnest S, Stippec S, Wichaidit C, Juang Y-C, Wang J, Shvartsman S, Goldsmith E, Cobb M. Functional divergence caused by mutations in an energetic hotspot in ERK2. Proc Natl Acad Sci U S A. 2019;116(31):15514–15523. PMCID: PMC6681740 Reference Link
1.Song Y, Park J, Tanner L, Nagano Y, Rabinowitz J, Shvartsman S. Energy budget of Drosophila embryogenesis. Curr Biol. 2019;29(12):R566-R567. PMCID: PMC9665180 Reference Link
1.Shvartsman S, Krajnc M. Nuclear (Bio)physics in the Embryo. Cell. 2019;177(4):799–801. PMID: 31051102 Reference Link
1.Alsous J, Villoutreix P, Stoop N, Shvartsman S, Dunkel J. Entropic effects in cell lineage tree packings. Nat Phys. 2018;14(10):1016–1021. PMCID: PMC6419958 Reference Link
1.Patel A, Shvartsman S. Outstanding questions in developmental ERK signaling. Development. 2018;145(14). PMCID: PMC6078328 Reference Link
1.Goyal Y, Schüpbach T, Shvartsman S. A quantitative model of developmental RTK signaling. Dev Biol. 2018;442(1):80–86. PMCID: PMC6501586 Reference Link
1.Diegmiller R, Montanelli H, Muratov C, Shvartsman S. Spherical Caps in Cell Polarization. Biophys J. 2018;115(1):26–30. PMCID: PMC6035301 Reference Link
1.Jindal G, Goyal Y, Humphreys J, Yeung E, Tian K, Patterson V, He H, Burdine R, Goldsmith E, Shvartsman S. How activating mutations affect MEK1 regulation and function. J Biol Chem. 2017;292(46):18814–18820. PMCID: PMC5704466 Reference Link
1.Keenan S, Shvartsman S. Mechanisms and causality in molecular diseases. Hist Philos Life Sci. 2017;39(4):35. PMCID: PMC6445273 Reference Link
1.Cardoso M, Fontenele M, Lim B, Bisch P, Shvartsman S, Araujo H. A novel function for the IκB inhibitor Cactus in promoting Dorsal nuclear localization and activity in the embryo. Development. 2017;144(16):2907–2913. PMCID: PMC5592809 Reference Link
1.Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis I, Singer A, Shvartsman S. Synthesizing developmental trajectories. PLoS Comput Biol. 2017;13(9):e1005742. PMCID: PMC5619836 Reference Link
1.Alsous J, Villoutreix P, Berezhkovskii A, Shvartsman S. Collective Growth in a Small Cell Network. Curr Biol. 2017;27(17):2670–2676.e4. PMCID: PMC6333208 Reference Link
1.Mattingly H, Sheintuch M, Shvartsman S. The Design Space of the Embryonic Cell Cycle Oscillator. Biophys J. 2017;113(3):743–752. PMCID: PMC5550316 Reference Link
1.Song Y, Marmion R, Park J, Biswas D, Rabinowitz J, Shvartsman S. Dynamic Control of dNTP Synthesis in Early Embryos. Dev Cell. 2017;42(3):301–308.e3. PMCID: PMC5630127 Reference Link
1.Goyal Y, Levario T, Mattingly H, Holmes S, Shvartsman S, Lu H. Parallel imaging of embryos for quantitative analysis of genetic perturbations of the Ras pathway. Dis Model Mech. 2017;10(7):923–929. PMCID: PMC5536913 Reference Link
1.Osterfield M, Berg C, Shvartsman S. Epithelial Patterning, Morphogenesis, and Evolution: Drosophila Eggshell as a Model. Dev Cell. 2017;41(4):337–348. PMCID: PMC5443119 Reference Link
1.Pyrowolakis G, Veikkolainen V, Yakoby N, Shvartsman S. Gene regulation during eggshell patterning. Proc Natl Acad Sci U S A. 2017;114(23):5808–5813. PMCID: PMC5468638 Reference Link
1.Rogers W, Goyal Y, Yamaya K, Shvartsman S, Levine M. Uncoupling neurogenic gene networks in the embryo. Genes Dev. 2017;31(7):634–638. PMCID: PMC5411704 Reference Link
1.Arora N, Alsous J, Guggenheim J, Mak M, Munera J, Wells J, Kamm R, Asada H, Shvartsman S, Griffith L. A process engineering approach to increase organoid yield. Development. 2017;144(6):1128–1136. PMCID: PMC5358111 Reference Link
1.Samee M, Lim B, Samper N, Lu H, Rushlow C, Jiménez G, Shvartsman S, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Syst. 2015;1(6):396–407. PMCID: PMC5094195 Reference Link
1.Rubinstein B, Mattingly H, Berezhkovskii A, Shvartsman S. Long-term dynamics of multisite phosphorylation. Mol Biol Cell. 2016;27(14):2331–40. PMCID: PMC4945148 Reference Link
