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Diegmiller R, Nunley H, Shvartsman S, Alsous J. Quantitative models for building and growing fated small cell networks. Interface Focus. 2022;12(4):20210082. PMCID: PMC9184967
Stanislav Shvartsman
Leading initial
Y
First name
Stanislav
Last name
Shvartsman
- Reference Link
- Reference Link1.Singh J, Alsous J, Garikipati K, Shvartsman S. Mechanics of stabilized intercellular bridges. Biophys J. 2022;121(16):3162–3171. PMCID: PMC9463629
- Reference Link1.McFann S, Shvartsman S, Toettcher J. Putting in the Erk: Growth factor signaling and mesoderm morphogenesis. Curr Top Dev Biol. 2022;149:263–310. PMID: 35606058
- Reference Link1.Keenan S, Avdeeva M, Yang L, Alber D, Wieschaus E, Shvartsman S. Dynamics of endoderm specification. Proc Natl Acad Sci U S A. 2022;119(15):e2112892119. PMCID: PMC9169638
- Reference Link1.Stern T, Shvartsman S, Wieschaus E. Deconstructing gastrulation at single-cell resolution. Curr Biol. 2022;32(8):1861–1868.e7. PMCID: PMC9221752
- Reference Link1.Alsous J, Rozman J, Marmion R, Košmrlj A, Shvartsman S. Clonal dominance in excitable cell networks. Nat Phys. 2021;17(12):1391–1395. PMCID: PMC8887698
- Reference Link1.Weaver C, Patel A, Shvartsman S, Levine M, Treen N. ERK signaling dissolves ERF repression condensates in living embryos. Proc Natl Acad Sci U S A. 2022;119(9). PMCID: PMC8892517
- Reference Link1.Doherty C, Amargant F, Shvartsman S, Duncan F, Gavis E. Bidirectional communication in oogenesis: a dynamic conversation in mice and Drosophila. Trends Cell Biol. 2022;32(4):311–323. PMCID: PMC8917990
- Reference Link1.Huang S-K, Whitney P, Dutta S, Shvartsman S, Rushlow C. Spatial organization of transcribing loci during early genome activation in Drosophila. Curr Biol. 2021;31(22):5102–5110.e5. PMCID: PMC8612988
- Reference Link1.Crapse J, Pappireddi N, Gupta M, Shvartsman S, Wieschaus E, Wühr M. Evaluating the Arrhenius equation for developmental processes. Mol Syst Biol. 2021;17(8):e9895. PMCID: PMC8377445
- Reference Link1.Diegmiller R, Doherty C, Stern T, Alsous J, Shvartsman S. Size scaling in collective cell growth. Development. 2021;148(18). PMCID: PMC8489028
- Reference Link1.Patel A, Zhang L, Keenan S, Rushlow C, Fradin C, Shvartsman S. Capicua is a fast-acting transcriptional brake. Curr Biol. 2021;31(16):3639–3647.e5. PMCID: PMC8612007
- Reference Link1.Shao B, Diegmiller R, Shvartsman S. Collective oscillations of coupled cell cycles. Biophys J. 2021;120(19):4242–4251. PMCID: PMC8516640
- Reference Link1.McFann S, Dutta S, Toettcher J, Shvartsman S. Temporal integration of inductive cues on the way to gastrulation. Proc Natl Acad Sci U S A. 2021;118(23). PMCID: PMC8201965
- Reference Link1.Doherty C, Diegmiller R, Kapasiawala M, Gavis E, Shvartsman S. Coupled oscillators coordinate collective germline growth. Dev Cell. 2021;56(6):860–870.e8. PMCID: PMC8265018
- Reference Link1.Diegmiller R, Zhang L, Gameiro M, Barr J, Alsous J, Schedl P, Shvartsman S, Mischaikow K. Mapping parameter spaces of biological switches. PLoS Comput Biol. 2021;17(2):e1008711. PMCID: PMC7895388
- Reference Link1.Marmion R, Yang L, Goyal Y, Jindal G, Wetzel J, Singh M, Schüpbach T, Shvartsman S. Molecular mechanisms underlying cellular effects of human MEK1 mutations. Mol Biol Cell. 2021;32(9):974–983. PMCID: PMC8108529
- Reference Link1.Fiore V, Krajnc M, Quiroz F, Levorse J, Pasolli A, Shvartsman S, Fuchs E. Publisher Correction: Mechanics of a multilayer epithelium instruct tumour architecture and function. Nature. 2020;586(7827):E9. PMID: 32913346
- Reference Link1.Stern T, Shvartsman S, Wieschaus E. Template-based mapping of dynamic motifs in tissue morphogenesis. PLoS Comput Biol. 2020;16(8):e1008049. PMCID: PMC7442231
- Reference Link1.Fiore V, Krajnc M, Quiroz F, Levorse J, Pasolli A, Shvartsman S, Fuchs E. Mechanics of a multilayer epithelium instruct tumour architecture and function. Nature. 2020;585(7825):433–439. PMCID: PMC7787055
- Reference Link1.Johnson H, Djabrayan N, Shvartsman S, Toettcher J. Optogenetic Rescue of a Patterning Mutant. Curr Biol. 2020;30(17):3414–3424.e3. PMCID: PMC7730203
- Reference Link1.Song Y, Shvartsman S. Chemical Embryology Redux: Metabolic Control of Development. Trends Genet. 2020;36(8):577–586. PMID: 32532533
- Reference Link1.Dutta S, Djabrayan N, Smits C, Rowley C, Shvartsman S. Excess dNTPs Trigger Oscillatory Surface Flow in the Early Drosophila Embryo. Biophys J. 2020;118(10):2349–2353. PMCID: PMC7231883
- Reference Link1.Keenan S, Blythe S, Marmion R, Djabrayan N, Wieschaus E, Shvartsman S. Rapid Dynamics of Signal-Dependent Transcriptional Repression by Capicua. Dev Cell. 2020;52(6):794–801.e4. PMCID: PMC7161736
- Reference Link1.Smits C, Shvartsman S. The design and logic of terminal patterning in Drosophila. Curr Top Dev Biol. 2020;137:193–217. PMID: 32143743
- Reference Link1.Yeung E, McFann S, Marsh L, Dufresne E, Filippi S, Harrington H, Shvartsman S, Wühr M. Inference of Multisite Phosphorylation Rate Constants and Their Modulation by Pathogenic Mutations. Curr Biol. 2020;30(5):877–882.e6. PMCID: PMC7085240
- Reference Link1.Paul S, Yang L, Mattingly H, Goyal Y, Shvartsman S, Veraksa A. Activation-induced substrate engagement in ERK signaling. Mol Biol Cell. 2020;31(4):235–243. PMCID: PMC7183763
- Reference Link1.Patel A, Yeung E, McGuire S, Wu A, Toettcher J, Burdine R, Shvartsman S. Optimizing photoswitchable MEK. Proc Natl Acad Sci U S A. 2019;116(51):25756–25763. PMCID: PMC6926043
- Reference Link1.Dutta S, Djabrayan N, Torquato S, Shvartsman S, Krajnc M. Self-Similar Dynamics of Nuclear Packing in the Early Drosophila Embryo. Biophys J. 2019;117(4):743–750. PMCID: PMC6712419
- Reference Link1.Taylor C, Cormier K, Keenan S, Earnest S, Stippec S, Wichaidit C, Juang Y-C, Wang J, Shvartsman S, Goldsmith E, Cobb M. Functional divergence caused by mutations in an energetic hotspot in ERK2. Proc Natl Acad Sci U S A. 2019;116(31):15514–15523. PMCID: PMC6681740
- Reference Link1.Song Y, Park J, Tanner L, Nagano Y, Rabinowitz J, Shvartsman S. Energy budget of Drosophila embryogenesis. Curr Biol. 2019;29(12):R566-R567. PMCID: PMC9665180
- Reference Link1.Shvartsman S, Krajnc M. Nuclear (Bio)physics in the Embryo. Cell. 2019;177(4):799–801. PMID: 31051102
- Reference Link1.Alsous J, Villoutreix P, Stoop N, Shvartsman S, Dunkel J. Entropic effects in cell lineage tree packings. Nat Phys. 2018;14(10):1016–1021. PMCID: PMC6419958
- Reference Link1.Patel A, Shvartsman S. Outstanding questions in developmental ERK signaling. Development. 2018;145(14). PMCID: PMC6078328
- Reference Link1.Goyal Y, Schüpbach T, Shvartsman S. A quantitative model of developmental RTK signaling. Dev Biol. 2018;442(1):80–86. PMCID: PMC6501586
- Reference Link1.Diegmiller R, Montanelli H, Muratov C, Shvartsman S. Spherical Caps in Cell Polarization. Biophys J. 2018;115(1):26–30. PMCID: PMC6035301
- Reference Link1.Jindal G, Goyal Y, Humphreys J, Yeung E, Tian K, Patterson V, He H, Burdine R, Goldsmith E, Shvartsman S. How activating mutations affect MEK1 regulation and function. J Biol Chem. 2017;292(46):18814–18820. PMCID: PMC5704466
- Reference Link1.Keenan S, Shvartsman S. Mechanisms and causality in molecular diseases. Hist Philos Life Sci. 2017;39(4):35. PMCID: PMC6445273
- Reference Link1.Cardoso M, Fontenele M, Lim B, Bisch P, Shvartsman S, Araujo H. A novel function for the IκB inhibitor Cactus in promoting Dorsal nuclear localization and activity in the embryo. Development. 2017;144(16):2907–2913. PMCID: PMC5592809
- Reference Link1.Villoutreix P, Andén J, Lim B, Lu H, Kevrekidis I, Singer A, Shvartsman S. Synthesizing developmental trajectories. PLoS Comput Biol. 2017;13(9):e1005742. PMCID: PMC5619836
- Reference Link1.Alsous J, Villoutreix P, Berezhkovskii A, Shvartsman S. Collective Growth in a Small Cell Network. Curr Biol. 2017;27(17):2670–2676.e4. PMCID: PMC6333208
- Reference Link1.Mattingly H, Sheintuch M, Shvartsman S. The Design Space of the Embryonic Cell Cycle Oscillator. Biophys J. 2017;113(3):743–752. PMCID: PMC5550316
- Reference Link1.Song Y, Marmion R, Park J, Biswas D, Rabinowitz J, Shvartsman S. Dynamic Control of dNTP Synthesis in Early Embryos. Dev Cell. 2017;42(3):301–308.e3. PMCID: PMC5630127
- Reference Link1.Goyal Y, Levario T, Mattingly H, Holmes S, Shvartsman S, Lu H. Parallel imaging of embryos for quantitative analysis of genetic perturbations of the Ras pathway. Dis Model Mech. 2017;10(7):923–929. PMCID: PMC5536913
- Reference Link1.Osterfield M, Berg C, Shvartsman S. Epithelial Patterning, Morphogenesis, and Evolution: Drosophila Eggshell as a Model. Dev Cell. 2017;41(4):337–348. PMCID: PMC5443119
- Reference Link1.Pyrowolakis G, Veikkolainen V, Yakoby N, Shvartsman S. Gene regulation during eggshell patterning. Proc Natl Acad Sci U S A. 2017;114(23):5808–5813. PMCID: PMC5468638
- Reference Link1.Rogers W, Goyal Y, Yamaya K, Shvartsman S, Levine M. Uncoupling neurogenic gene networks in the embryo. Genes Dev. 2017;31(7):634–638. PMCID: PMC5411704
- Reference Link1.Arora N, Alsous J, Guggenheim J, Mak M, Munera J, Wells J, Kamm R, Asada H, Shvartsman S, Griffith L. A process engineering approach to increase organoid yield. Development. 2017;144(6):1128–1136. PMCID: PMC5358111
- Reference Link1.Samee M, Lim B, Samper N, Lu H, Rushlow C, Jiménez G, Shvartsman S, Sinha S. A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. Cell Syst. 2015;1(6):396–407. PMCID: PMC5094195
- Reference Link1.Rubinstein B, Mattingly H, Berezhkovskii A, Shvartsman S. Long-term dynamics of multisite phosphorylation. Mol Biol Cell. 2016;27(14):2331–40. PMCID: PMC4945148